Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0840 ATGTTTCTTTTGTGGATTGCCCGGGTCATGAATCATGATATTCTTATGGCTACTATGCTCAGTGGAGCAGCAATCATGGATGGAGCTTTGCTACTCATATCTGCTAATGAGAGCTGCCCACAACCACAAACCTCTGAGCATCTAGCTGCTATAGACATCATGCCTCAGTTGAAGTATAATATTGATGTTGTGTGCGAGCATATTGTGAAGAAGATCCCAATTCCTAAAAGGAACTTTGTATCTCCACCTAATATGATTGTAATTCGGTCATTTGATGTCAATAAGCCTGGAGGAAACAATAAGCCATTCAAGAAAACCAGGAAAGAGTATGTGCTCGCCTTCAAGAAACTACATGAATATGTTCCAATTTCTAGtttagtcccacTTCAGATCTTCTCAAATTCAACAAGTgctatcagagcctggttcgtGTGGTCACCACTCGGTGTTGGAGTAAGCAGGGATCAAGAAGTCTTGACGGAAGTGCAGGGCACAGTCAAGAGGATGGCAGACATGGGATGCAGCGTTAACGGTatggaaaaattaaatagtaataattataatacttgGAGTACGCGTATGAGATTTTACCTGCTTAGTCAAGATTTATGGAGTCTTGTCGGAGGGGAAGAAACCCAACCTCTAACAGGAGAAGAAGATCTTAAGAAGTGGAAGGTTAGAGCGGGCAAGGCGATGTATGTGCTGTCGGTGATGGTGGAGGACGACATACTGCATCACATTAAGGAAGCAAAGACACCCAAAGAAGCATGGGACGCTCTCATAGGTTTGTACGCACGCACAAATGACGCTAAACTCCAGCACTTGGAAAATGAGCTGCTATCAATGTCGCAGCAGAATATGACAATTGGTGAGTACTTTTCTAAAGTTAAATCAATATGCCAAGAAATTTCTAAATTAGATCCTTAG 927 0.3981 MFLLWIARVMNHDILMATMLSGAAIMDGALLLISANESCPQPQTSEHLAAIDIMPQLKYNIDVVCEHIVKKIPIPKRNFVSPPNMIVIRSFDVNKPGGNNKPFKKTRKEYVLAFKKLHEYVPISSLVPLQIFSNSTSAIRAWFVWSPLGVGVSRDQEVLTEVQGTVKRMADMGCSVNGMEKLNSNNYNTWSTRMRFYLLSQDLWSLVGGEETQPLTGEEDLKKWKVRAGKAMYVLSVMVEDDILHHIKEAKTPKEAWDALIGLYARTNDAKLQHLENELLSMSQQNMTIGEYFSKVKSICQEISKLDP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0840 308 Pfam gag-polypeptide of LTR copia-type 224 307 - -
Sto1g0840 308 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 56 110 - -
Sto1g0840 308 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 11 54 - -
Sto1g0840 308 Gene3D - 4 70 IPR027417 -
Sto1g0840 308 Pfam Domain of unknown function (DUF4219) 182 206 IPR025314 -
Sto1g0840 308 Gene3D Translation factors 78 106 - -
Sto1g0840 308 PANTHER BNAA08G27720D PROTEIN 11 54 - -
Sto1g0840 308 PANTHER BNAA08G27720D PROTEIN 56 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0840 Sto-Chr1 8913737 8918372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0840 11 97 Eukaryotic Initiation Factors Gene Family AT1G04170 59.091 4.42e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0840 - - egr:108955896 206.838