Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0835 atGGCGATGAGGAAGATGAGGAAGTGCAAGACGACGAACCAGAGAAGATTCAGTGATGAGCAGATCAAATCACTGGAATCTATGTTCGAGACAGAGACAAGGCTTGAGCCGAGGAAGAAGTTGCAGCTCGCAAGAGAGCTTGGGTTGCAGCCAAGGCAGGTGGCTATATGGTTCCAGAACAAGAGGGCTAGGTGGAAGTCAAAGCAGATTGAAAGAGACTATACCATACTTAGAGCCAATTATAGCAACTTGGCTTCACGGTTTGAAGCTCTCAAGAAGGAGAAGCAGGCATTGCTTGTTCAGTTACAGAAGCTGAATGACATAATACAGAAGCCAAAAGAGCAAGGTCAGTGCTATGCACAGATGAAACCAGCGAACAGTATGGATAGTGAATCAGAAAACGGAGAAGACGACGTTAAAGGCAAAGCAGAGGTAAAGCCAATTAGTCCATCAATGGAAAGATCGGAGCACATACTGGGTGTCCTCTCGGATGATGACAGCAGCATAAAGGCAGAATACTTTGGGCTTGAAGATAACGAACCTGCCCTTATGAACTTCGTAGAGCAAGCCGATGATTCCTTGAACTCAGCAGAAGATTGGGGTGCTTTTGAATCCGATGACCTCTTGGACCAATCGGGTAGTGGCTATCAGTGGTGGGACTTCTGGTCCTGA 672 0.4673 MAMRKMRKCKTTNQRRFSDEQIKSLESMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQIERDYTILRANYSNLASRFEALKKEKQALLVQLQKLNDIIQKPKEQGQCYAQMKPANSMDSESENGEDDVKGKAEVKPISPSMERSEHILGVLSDDDSSIKAEYFGLEDNEPALMNFVEQADDSLNSAEDWGAFESDDLLDQSGSGYQWWDFWS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0835 223 PRINTS Lambda-repressor HTH signature 39 48 IPR000047 GO:0003677
Sto1g0835 223 PRINTS Lambda-repressor HTH signature 48 64 IPR000047 GO:0003677
Sto1g0835 223 CDD homeodomain 14 69 IPR001356 GO:0003677
Sto1g0835 223 SUPERFAMILY Homeodomain-like 12 80 IPR009057 -
Sto1g0835 223 ProSiteProfiles 'Homeobox' domain profile. 8 68 IPR001356 GO:0003677
Sto1g0835 223 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 3 223 IPR045224 GO:0003700
Sto1g0835 223 Gene3D - 2 75 - -
Sto1g0835 223 Pfam Homeodomain 14 66 IPR001356 GO:0003677
Sto1g0835 223 Pfam Homeobox associated leucine zipper 68 107 IPR003106 GO:0006355|GO:0043565
Sto1g0835 223 MobiDBLite consensus disorder prediction 123 145 - -
Sto1g0835 223 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 3 223 - -
Sto1g0835 223 SMART HOX_1 6 72 IPR001356 GO:0003677
Sto1g0835 223 ProSitePatterns 'Homeobox' domain signature. 43 66 IPR017970 GO:0000981|GO:0006355
Sto1g0835 223 Coils Coil 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0835 Sto-Chr1 8811337 8813043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0835 1 223 Homeobox Transcription Factor Family AT2G46680 54.959 1.13e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto1g0835 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0835 K09338 - pvy:116109008 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0835 1 8811337 8813043 Sto9g2704 9 29017053 29017801 ECH
Sto1g0835 1 8811337 8813043 Sto5g1335 5 9116284 9117247 ECH
Sto1g0835 1 8811337 8813043 Sto1g0835 1 8811337 8813043 ECH