Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0797 ATGCCACCGATAGCATTTGATCATTGGGATCCCTCCCAACTGCAGCAAGAAGTTAGCAACCATAGCCGCCTTTCAGAAAGCACCCATCCAGGCCCAATGACTATGCATCTTCACCTTCAGAGGAATCCTCCTCTTCTTTATCTTCTTCAGAGGTCTTTCCTTCTTCAACAGGCTCAGTTGAAGGTCTGCGATAAACGAAAATCGCTGACGATTTCGTTCCCTCGTTCTGCTCTTTCCTCTCTGCTACCTTCGACAACGAGGGTTAGCCAGCCTCGCTGCTGGCTCTACGCCATGTTCTGGCACACTTCCAGCGACGACAGAGGCCGACTCTTCCTCTCCTGCGCCGACGGCCACTTCCACGGCTCCTCCTCCGGTGTCGAGAGCCCCAACGGCACCATCGACGACAACCACCACGACGCCGAGTGGTTCTACGTCATGTCCTTGACTcgcactttctctctccctccggATCATAATTCTTCCGCTCCCTCCTCCCTTCCGGCCAAGGCATTCTCCTCTGGCTCTGTGCTTTGGATCAATATTACAGAGCAGGAGCTTCGGTTTCTCAATTGCGACAGATCCAAAGAGGCTTCCATGCACGGAATTCGAACTCTCGTCTGTGTTCCCACTAATTTCGGAGTCCTCGAGATGGGCTCTTCTCAAGTCGTCCCGCAGAATTGGGCTCTCATCCAGCATGTTAAGACTCTGTTCCGCGAGAAAATCCCGTTCAGCTCACAACCCAATCCCGTTCAATTCCTCGACGACGACGTCGTCGCCGCCGTCGACGTCGATGGGAACATCTCGTTCGCGGACATCGGCATTACAGCTGGCGTCCGGGAGGGAGAGAAGAACAACTCGTGCGAGAAAAATAAACATATCCTTCAGAAGGAATCATTGTTGTCGAGTGGTATTAGTAACAAATTGTCGTACGTGGACTACTCGGAGGAGCACTCGCATTCGGATTACTCCGACCGTCCCGGGAAAAGACCGCCGAAGAAACGCGGGAGGAAACCGGGTCCGGACCGGGAGACGACGCCGCTGAACCACGTGGAGGCGGAGCGGCAGCGGCGGGAGAAGCTCAACCACCGGTTCTACGCGCTGCGCGCGGTGGTGCCGAACGTGTCGCGGATGGACAAGGCGTCGCTGCTGTCGGACGCCGTGGCGTACATCAACGAGCTGAAGGCGAAGATCGAGGAGCTGGAGTCGCGGGTTCAGAGCAACGGCAAGGGCACGAAGGTGAAGCTGGAGAGGGCGGACACGGTGGAGTCCACGGTGGATCAGACGGCGGGGCCCAATGGGCCGCCCCGGGGTGGCCGGGTGGAGGTGGAAGTGAGAATCATGGGGCTCGATGCGATGGTTAGGGTTCAGTCGGAGAATACGAACCACCCGGGCGCGAGGCTCATGGGTGCGTTGCGAGACTTGGAGCTTCAGGTGCACCACGCCAGCATGTCGTGCGTGAACGAGATTATGCTCCAAGACGTCGTCGTTAAGATCCCACAAGGCTTGAGATGCGAAGAGCATTTAATTAAATCTGCGATTCTCAGGAAATTAGATCAGTAG 1560 0.5545 MPPIAFDHWDPSQLQQEVSNHSRLSESTHPGPMTMHLHLQRNPPLLYLLQRSFLLQQAQLKVCDKRKSLTISFPRSALSSLLPSTTRVSQPRCWLYAMFWHTSSDDRGRLFLSCADGHFHGSSSGVESPNGTIDDNHHDAEWFYVMSLTRTFSLPPDHNSSAPSSLPAKAFSSGSVLWINITEQELRFLNCDRSKEASMHGIRTLVCVPTNFGVLEMGSSQVVPQNWALIQHVKTLFREKIPFSSQPNPVQFLDDDVVAAVDVDGNISFADIGITAGVREGEKNNSCEKNKHILQKESLLSSGISNKLSYVDYSEEHSHSDYSDRPGKRPPKKRGRKPGPDRETTPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEELESRVQSNGKGTKVKLERADTVESTVDQTAGPNGPPRGGRVEVEVRIMGLDAMVRVQSENTNHPGARLMGALRDLELQVHHASMSCVNEIMLQDVVVKIPQGLRCEEHLIKSAILRKLDQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0797 519 MobiDBLite consensus disorder prediction 336 356 - -
Sto1g0797 519 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 393 IPR011598 GO:0046983
Sto1g0797 519 Gene3D - 341 409 IPR036638 GO:0046983
Sto1g0797 519 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 90 237 IPR025610 -
Sto1g0797 519 MobiDBLite consensus disorder prediction 315 356 - -
Sto1g0797 519 CDD bHLH_AtAIB_like 341 418 - -
Sto1g0797 519 Pfam Helix-loop-helix DNA-binding domain 348 393 IPR011598 GO:0046983
Sto1g0797 519 PANTHER TRANSCRIPTION FACTOR BHLH14 89 517 - -
Sto1g0797 519 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 405 IPR036638 GO:0046983
Sto1g0797 519 PANTHER MYC 89 517 IPR045084 GO:0003700|GO:0006355
Sto1g0797 519 SMART finulus 350 399 IPR011598 GO:0046983
Sto1g0797 519 MobiDBLite consensus disorder prediction 420 439 - -
Sto1g0797 519 Coils Coil 383 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0797 Sto-Chr1 8269220 8275696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0797 94 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 31.509 4.21e-70 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto1g0797 bHLH-MYC_N 1.5e-31 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0797 - K13422 tcc:18613913 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0797 1 8269220 8275696 Sto1g0797 1 8269220 8275696 ECH