Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0780 ATGTCGGAAGGTGCAGAAATTGACGAGCGTGTGGACTTTGAGGAGGAAAACTATATGGAAGAGATGGATGATGATGCTGAAGAACAAATATATGATGATGGAGTCGATGGAGGTGGTGAAGAAAATATTGAAGGGAATGCTGAAGAACATGAATATGAAGATTCAGTAGCagaaactagtgagaaagaccAATATCCTGAAGCAGATGGTAGCGACATTGTGACTGAATCTGCAGATGATGAGCAAAAGCCGTCTTCCATTGACGAAGATGAGAAGGAGAAGCATGATGAACTTCTTGCCCTTCCTCCTCATGGTTCTGAAATCTTTATTGGAGGACTTCCTCGGGATACATGCGAAGATGATTTAAGAGATTTGTGTGAGCCGATGGGTGATATTCTTGAGGTGAGAATTATGAAAGATAGGGACACTGGAGAAATCAAGGGTTATGCTTTTGTGGCATTTAAAACAAAAGAGGTTGCAAAGAAGGCCATTGAAGAGTTACATAACAAGGAATTTAAGGGTAAAACTTTAAGGTGTTCAGTGTCTGAAACAAAGCACAGATTGTTCATTGGTAATGTACCAAAGAACTGGACAGAGGACGAGTTTAGGAAAGTCATTGAGGGTGTTGGTCCTGGAGTTGAGAATATTGAGCTAATAAAGGACCCTCAAAATGCAAGCAGGAATCGTGGGTTTGCTTTTGTTCTGTATTACAATAATGCCTGTGCTGATTATTCACGCAAAAAGATGTCAAATTCAAACTTTAAGCTGGATGGTAATTCCCCCACTGTCACATGGGCAGATCCAAAGAACTCATCAGATAATTATGCCTCCTCACAGGTTAAGGCCCTTTATGTGAAAAACATTCCTGAAAATACTACCACTGAACAACTGAAGGAAATGTTCTGTCGCCATGGGGAAGTAACAAAAGTGGTGATGCCTCCTGGCAAATCTGGAGGGAAACGTGACTTTGGTTTCATTCATTATGCGGAAAGGTCAAGTGCATTGAAGGCTGTAAAAGATACggaaaaatatgaaatagacGGCCAAGTGTTAGAAGTTGTTCTCGCGAAACCTCAAACGGAGAAAAAATCTGATGGAGGTTATGCCTACAATCCTGGGCTTCATCCACATCCTGGGTATGGTGGCTTTTCAGGAAGTATGTATGGCTCTGTACGTACTGGATATGGTATGAATGCTGGTTATCAACAGGTGGGTCTTGCACATGAACAGCCTGTGATATATGGTAGGGGTCCAATGCCGGCAGGAATGCAGATGGTCCCAATGGTACTACCAGATGGCCGTATTGGTTATGTCCTTCAACAGCCTGGTGCACAGATGCCAGCTCCCCGACCCCGCAGAACTGAGCGGAAGAACGGTCCAAGTGGCCAGGCAGGACGAGGAGGAGGGGGAGGTAGCGGCAGTGATGAGGGCAATCGCGGTGGTAGAAGGTACCGACCCTATTAG 1464 0.4331 MSEGAEIDERVDFEEENYMEEMDDDAEEQIYDDGVDGGGEENIEGNAEEHEYEDSVAETSEKDQYPEADGSDIVTESADDEQKPSSIDEDEKEKHDELLALPPHGSEIFIGGLPRDTCEDDLRDLCEPMGDILEVRIMKDRDTGEIKGYAFVAFKTKEVAKKAIEELHNKEFKGKTLRCSVSETKHRLFIGNVPKNWTEDEFRKVIEGVGPGVENIELIKDPQNASRNRGFAFVLYYNNACADYSRKKMSNSNFKLDGNSPTVTWADPKNSSDNYASSQVKALYVKNIPENTTTEQLKEMFCRHGEVTKVVMPPGKSGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTEKKSDGGYAYNPGLHPHPGYGGFSGSMYGSVRTGYGMNAGYQQVGLAHEQPVIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGAQMPAPRPRRTERKNGPSGQAGRGGGGGSGSDEGNRGGRRYRPY 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0780 487 MobiDBLite consensus disorder prediction 8 39 - -
Sto1g0780 487 PANTHER GEO13361P1-RELATED 2 485 - -
Sto1g0780 487 MobiDBLite consensus disorder prediction 1 94 - -
Sto1g0780 487 Gene3D - 17 186 IPR012677 -
Sto1g0780 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Sto1g0780 487 CDD RRM3_hnRNPR_like 280 358 - -
Sto1g0780 487 MobiDBLite consensus disorder prediction 43 69 - -
Sto1g0780 487 SMART rrm1_1 107 180 IPR000504 GO:0003723
Sto1g0780 487 SMART rrm1_1 187 264 IPR000504 GO:0003723
Sto1g0780 487 SMART rrm1_1 282 354 IPR000504 GO:0003723
Sto1g0780 487 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 485 - -
Sto1g0780 487 CDD RRM_SF 108 180 - -
Sto1g0780 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Sto1g0780 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Sto1g0780 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Sto1g0780 487 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Sto1g0780 487 Gene3D - 269 402 IPR012677 -
Sto1g0780 487 MobiDBLite consensus disorder prediction 442 487 - -
Sto1g0780 487 MobiDBLite consensus disorder prediction 76 94 - -
Sto1g0780 487 Gene3D - 187 267 IPR012677 -
Sto1g0780 487 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Sto1g0780 487 SUPERFAMILY RNA-binding domain, RBD 187 274 IPR035979 GO:0003676
Sto1g0780 487 SUPERFAMILY RNA-binding domain, RBD 103 360 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0780 Sto-Chr1 7997265 8006314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0780 108 455 Eukaryotic Initiation Factors Gene Family AT1G71770 25.897 4.76e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0780 K13161 - gmx:100790907 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0780 1 7997265 8006314 Sto1g0780 1 7997265 8006314 ECH