Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0745 ATGAGAGCGCTCGACAGAGATAGGAATAGGGCTGGCGATGCAGCGGCTGACGGTCTGCAGAGACAGATGAGGGCTGAGAAATTGCAAAAAAGTGTAAAGATGTCGTTTGGAGAGCTTGCTTGCTCCTACGCGGTTATGATCCTTCACGATGATAACATTCCTGTGACTGCTGAGAAGATCTCGACCTTGGTAAAGGCTGCAAACGTTGAAATTGAATCTTATTGGGCAAGCTTATTTGCTAAACTTGCTGAGAAGAGAAGCATAGATGATTTGATAATGAGTGGTGGAGGAGGTGGTGCTCCAGTTGCTGTTGCTGCCCCAGCAGCGGCAGCTGCTGGTGGTggtgccgccgccgccgccgccccTGCTGctgaggagaagaagaagGAAGAGCCCCAGGAAGAGAGTGACGATGACATGGGATTCAGCTTGTTTGATTAG 441 0.4444 MRALDRDRNRAGDAAADGLQRQMRAEKLQKSVKMSFGELACSYAVMILHDDNIPVTAEKISTLVKAANVEIESYWASLFAKLAEKRSIDDLIMSGGGGGAPVAVAAPAAAAAGGGAAAAAAPAAEEKKKEEPQEESDDDMGFSLFD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0745 146 CDD Ribosomal_P1 38 93 - -
Sto1g0745 146 Gene3D - 33 96 IPR038716 -
Sto1g0745 146 MobiDBLite consensus disorder prediction 119 146 - -
Sto1g0745 146 Hamap 50S ribosomal protein L12 [rpl12]. 39 146 IPR027534 GO:0003735|GO:0005840|GO:0006414
Sto1g0745 146 Pfam 60s Acidic ribosomal protein 55 145 - -
Sto1g0745 146 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 34 146 - -
Sto1g0745 146 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1-1-RELATED 34 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0745 Sto-Chr1 7537539 7539329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0745 34 146 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 54.867 2.42e-38 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0745 K02942 - egr:104424551 129.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0745 1 7537539 7539329 Sto9g2684 9 28918688 28920314 ECH
Sto1g0745 1 7537539 7539329 Sto5g1355 5 9275939 9277466 ECH
Sto1g0745 1 7537539 7539329 Sto1g0745 1 7537539 7539329 ECH