Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0726 ATGGCAGCCAATGCTCTCTGGTTACCTCCACCTTCTCTCTCAGCACTCCGAAACAAACCCCAACAATTCTTCCCTTCGGTGAAACGGAGCGTTTCATGTTCGGTGCCTTTACCTTCTTCGTCTCACTCGCTATCCCCTCTCGTTATCTTCTCTCCGCAGCCTAGCGCTTCGGAcccttcgtcttcttcttcttcgttggAATGGCGAAGAAGGAAAGCTAGGGTTTCCTCGGCTTCGGCGGTTGTGAATGAAGAAGCGGTGGTCACAGAAGGGATTAACGAAGGCGCATATGTGGACTCGGAAAACGACGACGTTTCCGACGAGAAAGAACCCAAGAAAGAGGGAAGACCATGTGAAGTATATGTGTGTAACCTTCCAAGGAGCTGTGACTCGACACAGCTTCACGATATGTTCAAGCCTTTTGGAAGTGTTTTATCAGCGGAGATTTGTCGGATTGCCGAGACTGGTGAAAGTAGAGGATGTGGTTATATCACAATGGGATCTATAAACTCAGCAAAAAATGCAATTGCTGCATTGGATGGATCAGACATTGATGGGCGTGAAATGAGGGTTAGATTTTCAGCTGAGATGAATCCTGGAAGGAGGAACCCTGAGACAATGAACTCATCGCCACAGAAAGTCAGATTCTATGAATCTCCTCATAAGTTGTATATTGGCAATCTTGCGAGGTCTGTTCAACCTGAGGACCTATGGAATCAATTTAGAAGATTTGGGACTGTGGTTAGTGTAAGAATATTGCATGATCACAAAAAAGGGAACAATCGTATCTATGCATTTCTCTCATTCCTTTCAGAGTCAGAACGCAATGCTGCACTGTCTCTTAATGGAACTGATCTTCAAGGCCGAACAATAGTAGTGAGAGAAGATGCAATTGATACGAACTTGAGAAGTTTGTTGTCTTTGGCATCTTACAGCACTATGCTTGTAAATTATGAAATGCTTGCCATCCAGGTCAGGTTCATATGGTCTTTGTGTATTGCTGCTATTCGATTTTGGCATGGAGATCTGAACTCTGAAGATTCTGTTGCTTGA 1053 0.434 MAANALWLPPPSLSALRNKPQQFFPSVKRSVSCSVPLPSSSHSLSPLVIFSPQPSASDPSSSSSSLEWRRRKARVSSASAVVNEEAVVTEGINEGAYVDSENDDVSDEKEPKKEGRPCEVYVCNLPRSCDSTQLHDMFKPFGSVLSAEICRIAETGESRGCGYITMGSINSAKNAIAALDGSDIDGREMRVRFSAEMNPGRRNPETMNSSPQKVRFYESPHKLYIGNLARSVQPEDLWNQFRRFGTVVSVRILHDHKKGNNRIYAFLSFLSESERNAALSLNGTDLQGRTIVVREDAIDTNLRSLLSLASYSTMLVNYEMLAIQVRFIWSLCIAAIRFWHGDLNSEDSVA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0726 350 PANTHER OS02G0815200 PROTEIN 36 296 - -
Sto1g0726 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Sto1g0726 350 SMART rrm1_1 119 192 IPR000504 GO:0003723
Sto1g0726 350 SMART rrm1_1 222 294 IPR000504 GO:0003723
Sto1g0726 350 SUPERFAMILY RNA-binding domain, RBD 218 295 IPR035979 GO:0003676
Sto1g0726 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Sto1g0726 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 190 IPR000504 GO:0003723
Sto1g0726 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 291 IPR000504 GO:0003723
Sto1g0726 350 Gene3D - 54 199 IPR012677 -
Sto1g0726 350 Gene3D - 200 298 IPR012677 -
Sto1g0726 350 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 36 296 - -
Sto1g0726 350 SUPERFAMILY RNA-binding domain, RBD 111 207 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0726 Sto-Chr1 7228076 7231431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0726 120 293 Eukaryotic Initiation Factors Gene Family AT2G36660 32.778 5.88e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0726 - - gmx:100792560 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0726 1 7228076 7231431 Sto1g0726 1 7228076 7231431 ECH