Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0709 ATGATGGAGAGGCTTCAAGGACCCATCAATTCCTGTTTCTTTGGTGAGCATTTGGAAGTAAATTGTTTAGAGCAAGGCTTCATCAATACAGAGGAAGACGAACATTTTTTAATATCTAGCTTAGAGGATGCAAAGATGCCATTTCTACAGATGCTACAGAGTGTGGAATACCCACAACAAATTTTCCCCTTCTCAGAGGCAAATTTTCAAACACTTCTAAGGCTGCAACACCTGAAGAACAATCAAGCATGGGAAGAGAAAGCGTACGTACCCAGATTGAAGCCCCAAATCCAAGCAATGGTAGAACCTGAAAGCTGCGTCACACACGACGTCGTAGAGATCCATTCGCCTGCGAAATCCGAAACCAACCAagacctccatcatcatcatcatcttcctcctcatTCAGCTACAACAATGGTCGACAACGCAGAACGACCCGATCAAGCTGAAAATTGTAGCATCAGAGAGCCCAAAcgcagaaagagaaagagaacgaGACCAACGAAGAACAAGGAAGAAGTGGAGAACCAGAGAAGGACTCACATTGCCGTCGAACGCAACCGGCGACGCCAGATGAACGACCACCTCAGCGTCCTGAAAACCCTCATGCCCCCTTCCTACATTCAAAGGGGCGACCAAGCGTCGATCATCGGAGGAGCCATAGATTTCGTGAAGGAATTGGAGCAGCTGCTCCAATCTCTCGAGGCGGAAAAGAGGAATAGAAAGAACGAAGAGATCGGTTCTACCAGCGAGATTCCGAAACCTTCATCGCTTAGTTacgaagaaggagaagaagaagaagaagaagaaggagaagcgaAGATAGAAGCGACGGTGATTCAAACGCATGTGAACTTGAAGATTCGTTGCAGAAGGATAAATGGACAATTGGTGAAAGCCATTGTTGCTTTGGAGGAACTTAGGCTCAGTGTTCTGCATCTCAATATCACCTCCTCACGGGCTTCGGTACTATACTGTTTCAATCTCAAGATTGAAGAAGAGTGTAAGCTTGGTTCAGCAAATGAAATAGCAGAAGCAGTTCGTGAGATATTCAGCTTCATAAATGGTAGCTAG 1077 0.416 MMERLQGPINSCFFGEHLEVNCLEQGFINTEEDEHFLISSLEDAKMPFLQMLQSVEYPQQIFPFSEANFQTLLRLQHLKNNQAWEEKAYVPRLKPQIQAMVEPESCVTHDVVEIHSPAKSETNQDLHHHHHLPPHSATTMVDNAERPDQAENCSIREPKRRKRKRTRPTKNKEEVENQRRTHIAVERNRRRQMNDHLSVLKTLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAEKRNRKNEEIGSTSEIPKPSSLSYEEGEEEEEEEGEAKIEATVIQTHVNLKIRCRRINGQLVKAIVALEELRLSVLHLNITSSRASVLYCFNLKIEEECKLGSANEIAEAVREIFSFINGS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0709 358 MobiDBLite consensus disorder prediction 119 181 - -
Sto1g0709 358 SMART finulus 183 234 IPR011598 GO:0046983
Sto1g0709 358 Coils Coil 225 248 - -
Sto1g0709 358 MobiDBLite consensus disorder prediction 240 274 - -
Sto1g0709 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 228 IPR011598 GO:0046983
Sto1g0709 358 Pfam Helix-loop-helix DNA-binding domain 178 229 IPR011598 GO:0046983
Sto1g0709 358 PANTHER MAX DIMERIZATION, MAD 24 357 - -
Sto1g0709 358 PANTHER TRANSCRIPTION FACTOR BHLH70 24 357 - -
Sto1g0709 358 CDD bHLH_AtFAMA_like 181 251 - -
Sto1g0709 358 Gene3D - 168 255 IPR036638 GO:0046983
Sto1g0709 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 244 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0709 Sto-Chr1 7083808 7086804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0709 45 357 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 46.646 6.29e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto1g0709 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0709 - - gmx:100789928 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0709 1 7083808 7086804 Sto1g0709 1 7083808 7086804 ECH