Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0641 ATGATCCCCGCATCTCAAGAAGCTATTGAGTCTTTGAATACTGCGATGGTTAAAGGAGACGTTAACGACGTCGCTATTATTGATGGCGATTATTGTTGCATCTGTTTCGAAGAGTACCACGATGAAGAAGTTGAGATTTCAATTATGCCTTGCCACCATGTTTATCATAATAATTGTATTGTGGAGTGGCttaaaattagtcatttatgtccATTATGTCGATTTGAGATGCCTATGAATTACTTCGATGTAGTTATGTACATACAAACAtga 273 0.3443 MIPASQEAIESLNTAMVKGDVNDVAIIDGDYCCICFEEYHDEEVEISIMPCHHVYHNNCIVEWLKISHLCPLCRFEMPMNYFDVVMYIQT 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0641 90 SUPERFAMILY RING/U-box 21 80 - -
Sto1g0641 90 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Sto1g0641 90 PANTHER F6A14.12 PROTEIN-RELATED 3 78 - -
Sto1g0641 90 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 78 - -
Sto1g0641 90 ProSiteProfiles Zinc finger RING-type profile. 32 74 IPR001841 -
Sto1g0641 90 SMART ring_2 32 73 IPR001841 -
Sto1g0641 90 Pfam Ring finger domain 31 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0641 Sto-Chr1 6280750 6281022 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0641 3 80 C3H Transcription Factor Family AT1G68180 41.026 1.38e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0641 - K22378 aip:107621087 85.1149