Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0626 ATGGAATTGATGCATCAAGAAGCAGCAATAAGCAGAGAGGAAGATTTGttagaggaggaagaggaattAGCAAATCATAATAAACAAATCAGGTTTCAGGATGAAGCACCACCTAGAAAGCCCCTACACCACCTCATGGACTTATCCTTGGGGAACTCTAACGAACAAGACGACGTCGTTCTTGCCAATTCCGCCACCACCAGCGGCGGAAACAACGCCGCCGCCGTCGATCCCGCCGTGGAGAAAGAGCACATGTTCGACAAGGTCGTCACTCCGAGCGACGTTGGCAAGCTCAACCGCCTCGTGATCCCGAAGCAGCACGCGGAGCGCTACTTCCCGCTCGACGCCTCCACCAACGACAAGGGCTTGCTCCTGAACTTCGAGGACCGCGGCGGCAAGCTGTGGCGGTTCCGCTACTCCTACTGGAATAGCAGCCAGAGCTACGTGATGACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGAAGCTCGACGCCGGCGACATTGTGTCGTTCCACCGCGGCCTTGGCGAGATGTATAGACATCGCTTGTACATAGATTGGCGGCGCCGGCCGGATCACATCCCCGTGCCCAATAACCACCACCATCCGGTCCCCGCGAGCTCGCTCATTAGCCCGTTCTTCGTTCCGAATCAATACACCATCAGATGGGGTGGTGGCGGCGATGGCAGCAGCGGTAGAATGTACTCCGTGCCCACGGTCGCGCCGCCCGCACCGATGAATTACAATAATTACGGGTTTCAGGAACCTCAATTGCTGCTGCAGCATCAACATCAGTatcagcagcagcagcaacgACAATACCAACAGGTGTATGGTGGGAATGGTTATAATGTCAACAATGAGATGAACTTGGGATCTGGATCATTGTACTACTTGAGGTCAACCGTGCCGGGGCAACGTGACGGAGGCAGTGATATGGCTCCGATGATCATCGATTCGGTGCCCGTTGCTCATGGTATGAGCAGTggtagtggtggtggtagtAATAATGCTGGAAAAAGGCTGAGACTATTTGGGGTAAACATGGAATGTTcttcaccaccatcatcatcttccaaTTACATTGCTAATTCTTCCCTTCCCTCTCGAAATCCGAGGGAATCCAacgaagaacaagaagaagaattagaagAATACGAAGACAAGCCGATTGGATCATCGCCATCATCAGGATCAAGGTTTGGAGACGAAATACCAAAAGGGGAAACTTCAGTGCTTTTTGATTTGAACCCTTCTTCCTTTCATCAATACCGGCGatga 1281 0.4817 MELMHQEAAISREEDLLEEEEELANHNKQIRFQDEAPPRKPLHHLMDLSLGNSNEQDDVVLANSATTSGGNNAAAVDPAVEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDASTNDKGLLLNFEDRGGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGLGEMYRHRLYIDWRRRPDHIPVPNNHHHPVPASSLISPFFVPNQYTIRWGGGGDGSSGRMYSVPTVAPPAPMNYNNYGFQEPQLLLQHQHQYQQQQQRQYQQVYGGNGYNVNNEMNLGSGSLYYLRSTVPGQRDGGSDMAPMIIDSVPVAHGMSSGSGGGSNNAGKRLRLFGVNMECSSPPSSSSNYIANSSLPSRNPRESNEEQEEELEEYEDKPIGSSPSSGSRFGDEIPKGETSVLFDLNPSSFHQYRR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0626 426 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 64 377 - -
Sto1g0626 426 SUPERFAMILY DNA-binding pseudobarrel domain 83 189 IPR015300 -
Sto1g0626 426 Coils Coil 369 389 - -
Sto1g0626 426 ProSiteProfiles B3 DNA-binding domain profile. 86 191 IPR003340 GO:0003677
Sto1g0626 426 CDD B3_DNA 84 173 IPR003340 GO:0003677
Sto1g0626 426 SMART B3_2 86 191 IPR003340 GO:0003677
Sto1g0626 426 Gene3D - 79 203 IPR015300 -
Sto1g0626 426 MobiDBLite consensus disorder prediction 350 372 - -
Sto1g0626 426 MobiDBLite consensus disorder prediction 349 426 - -
Sto1g0626 426 Pfam B3 DNA binding domain 86 190 IPR003340 GO:0003677
Sto1g0626 426 Coils Coil 3 36 - -
Sto1g0626 426 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 64 377 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0626 Sto-Chr1 6149514 6150882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0626 45 351 RAV Transcription Factor Family AT2G46870 47.573 1.50e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sto1g0626 B3 1.7e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0626 - - gsj:114390989 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0626 1 6149514 6150882 Sto1g0626 1 6149514 6150882 ECH