Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0590 atgGATTCAATCCAGTCCTTCAAGGGCTACGGTAAGGTAGATGAGATCGAGCAGCAAGCCTACCAGAAGAAGACACGTAAGCGTTTCCTCATCCTCGGCGTCTCCATCGCCATCCTCATCGCCGTCATCGTCGCCGCCGTCGTCGGCACCGTCATACACAAGCGCAACtcctccgactccgactccgacaCCATCCCCCCGACGGAGCTAACCCCAGCCGCGTCGCTCAAAGCCGTCTGCAGCGTCACTCAGTACCCTACCTCCTGCTTGGCCAGCATCTCCTCCCTCCCGAACTCCAACACCACCGATCCGGAGCTCCTCTTCAAGCTCTCCCTGCGCGTCGCCGTCGACGCGCTCTCCAATCTCTCGAACCTTCCGTCGAAGCTCAAGGCCAATGTGAAGGATCCGCGCGTTCAGAAGGCAATCGATGTGTGCGGAGTCGTGTTCGACGACGCGGTGGATCGACTCAACGAGTCGATCTCGTCGctggaggtcgccggcgacggcGGGAAGATCTTGTCCCCGTCGAAGATCGGCGACGTCGAGACCTGGCTCAGCGCCGCGATTACCTACCAGGAGACCTGTTTGGACGCGCTGGAGGAGATAAATTCCACAACCGCGAGCGATACTCGTCGAGATCTGAGTAACGCAATGAAGAATTCGACGGAATTCGCGAGCAATAGCTTGGCCATTGTGACGAAGATTCTAGGTCTGCTCTCGAATTTCAACATGCCGATCCACCGGAGGCTGCTAGGGGTGGGCCCGGCGGAGCGGAGGCTGCTGCAGGAGGATGCGAACAAAACGACGTCGTCGTCGTGGGCGCCGGATGCGGTGGTGGCGAAGGACGGAAGCGGACAGTATAAGACGATCGGTGAAGCGTTGAAGGGCGTGAAGAAGAAGAGCGTGAAGAGGTTTGTGATACATGTGAAGGAAGGGACTTATGTGGAGAATATAGATTTGGATAAACACACTTGGAATGTGATGATTGTCGGCGATGGCAAGACGAAGACCTTCATCTCCGGTGGCCGGAATTTCATCGACGGCACGCCCACTTTTGAGACGGCTACTTTCGCCGTTAAGGGGAAGGGTTTCATCGCGAAGGACATAGCCTTCGTGAACACCGCCGGAGCCGAGAAGCACCAGGCGGTGGCGTTCCGGTCCGGCTCCGACCAGTCCGTCTTCTTCCGGTGCGCCTTCGACGGCTTCCAGGACACTCTCTACGCCCACTCCAACCGCCAATTCTACCGCGACTGCGACATCACCGGCACCATCGACTTCATCTTCGGCAACGCCGCCGTCATCTTCCAGAACTGCAACATCCGGCCTCGGCAGCCCCTACCCAACCAATTCAACACCATCACGGCTCAGGGCAAGAAGGACCCCAACCAGAACTCCGGGATCATCATCCAGAAATCCTCCATCGCCGCCGCCGACAAGAATCTCACCGCCCCGACGTACCTCGGCCGGCCGTGGAAGGAGTTCTCCACCACAGTGATCATGACGACGGAGATCGGCTCGTTCCTGAACCCGGTCGGATGGAAGGAGTGGGTCCCCAATGTGGAGCCCGCGAGCACCATATTCTATGCGGAGTATAAGAACAGTGGACCCGGTTCGGATGTGAGCCAGAGGGTTAAGTGGACCGGGTTTAGGCCGAGTCTGTCGGAGGAAGAGGCGAACAAGTTTACGGTTCAGTCCTTTATTGAAGGTAATGACTGGTTACAGGAAGCTTCGGTGGAGTATCAGTCCACTTTATAA 1755 0.5595 MDSIQSFKGYGKVDEIEQQAYQKKTRKRFLILGVSIAILIAVIVAAVVGTVIHKRNSSDSDSDTIPPTELTPAASLKAVCSVTQYPTSCLASISSLPNSNTTDPELLFKLSLRVAVDALSNLSNLPSKLKANVKDPRVQKAIDVCGVVFDDAVDRLNESISSLEVAGDGGKILSPSKIGDVETWLSAAITYQETCLDALEEINSTTASDTRRDLSNAMKNSTEFASNSLAIVTKILGLLSNFNMPIHRRLLGVGPAERRLLQEDANKTTSSSWAPDAVVAKDGSGQYKTIGEALKGVKKKSVKRFVIHVKEGTYVENIDLDKHTWNVMIVGDGKTKTFISGGRNFIDGTPTFETATFAVKGKGFIAKDIAFVNTAGAEKHQAVAFRSGSDQSVFFRCAFDGFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVIFQNCNIRPRQPLPNQFNTITAQGKKDPNQNSGIIIQKSSIAAADKNLTAPTYLGRPWKEFSTTVIMTTEIGSFLNPVGWKEWVPNVEPASTIFYAEYKNSGPGSDVSQRVKWTGFRPSLSEEEANKFTVQSFIEGNDWLQEASVEYQSTL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0590 584 Gene3D - 270 584 IPR012334 -
Sto1g0590 584 CDD PMEI-like_3 78 235 - -
Sto1g0590 584 Pfam Plant invertase/pectin methylesterase inhibitor 76 231 IPR006501 GO:0004857
Sto1g0590 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 236 IPR035513 -
Sto1g0590 584 SMART PMEI_2 71 231 IPR006501 GO:0004857
Sto1g0590 584 Pfam Pectinesterase 276 570 IPR000070 GO:0030599|GO:0042545
Sto1g0590 584 TIGRFAM PME_inhib: pectinesterase inhibitor domain 71 235 IPR006501 GO:0004857
Sto1g0590 584 ProSitePatterns Pectinesterase signature 1. 301 320 IPR018040 -
Sto1g0590 584 PANTHER PECTINESTERASE 1-RELATED 8 581 - -
Sto1g0590 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 236 IPR035513 -
Sto1g0590 584 PANTHER PECTINESTERASE 8 581 - -
Sto1g0590 584 SUPERFAMILY Pectin lyase-like 272 580 IPR011050 -
Sto1g0590 584 ProSitePatterns Pectinesterase signature 2. 420 429 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0590 Sto-Chr1 5645946 5650767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0590 1 578 Carbohydrate Esterase AT1G53840 58.853 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0590 - - gmx:100784642 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0590 1 5645946 5650767 Sto1g0590 1 5645946 5650767 ECH