Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0580 ATGATGTTTCATCCTGGAGGAGCTGCGAAACAAACTTGTAGTCTACTTGCTGTAGCATGTGGTGAAAGCTTTGAGCATGAGTTTGAGAAGAAGCTCCAACAGAGTCAGCCCACATATCCATTTCCTGAGTTAGCTTCTGCAGGACGTCTGGAGGTTCTAACTATAAATAATCCAGAAAAAGATGAGTTTCGAAAAACTTTTGAGGCTTTGCAACCGAATATTGTATACTTACAAGGAGAACAGCTTGTGAATGGTGAAGTTGGTTCTCTGGTCTGGCAAGGCGAGGATTTGGCCTCCTCTGAAGCTATATTGGAGCTCTTTGGTCCCACATTGCCAACAGCTGTTTACCTGGAAATCCCAAATGGAGAAGCATTGGCTGAGGCTCTTTATGATAAGGGAGTTGCATACGTGATTTATTGGAAGAATACTTTTTCTTGTTATGCTGCTTGCCATTTTCGCCAGGCATTTCTATCAGTGGTGCAGAGTTCATCTACACATACATGGGATGCCTTTCACCTTGCACGTGCTTCTTTTGAGCTTTATTGTGCACAAAACAATCAAATTCTTCCTTCTGAGAGTCATGATGCCAGTAGTAAAGGGCCACACCTTATTGGCAACTGTCTGAAAATCAATATTGACCCTCCTGAGGTgtttgaagatgatgaagaaagttCCTCAGGCAGTCTTCCTTCTATAAAGATACATGATGATGAAGTGAACCTGAGATTTCTTATCTGTGGTGCACCTTCAACTGTTGATGTATCAATGTTGAGATCTTTGGAGGATGGACTACGAGCACTCTTAACCATTGAAATTCGTGGCAGCAAACTCCATGGCAAGTTTAGTGCTCCCCCACCACCACTGCAGGCGGCCACTTTTTCCCGTGGAGTTGTGACTATGCGATGTGATATGTCAACCTGTAGTTCAGCCCATATCTCACTTTTGGTGTCTGGAAGTGCACAAACTTGCTTCAATGACCAGTTGTTGGAGaatcatataaaaaatgagataatTGAGAATAGTCAACTAGTTCATGCGGAAATAAATGAGGGAAACAAACAGCACGTCTCTGAACCTCGGAGATCGGCCTCAATTGCTTGTGGAGCAGCGGTATTTGAAGTGTCCATGAAGCTTCCTCAATGGGCTTTGCAGGTTTTGAGACAGCTAGCACCTGATGTTACTTATCGAAGTTTAGTTGCACTAGGGATTGCTAGCATTCAAGGGTTGCCTATTGCTTCATTTGAAAAAGACGATGCCGAGcgccttctttttttttatcaaagcCATGAGAAAGATAGTTGtgaaaacaatataattttcaGTAATCCCCCTGGTTGGTTGAAACCACCCCCTCCTACTAGAAAAAGGTGTGAGCCAAGCCAAGAGGTAAGCCCTGGCCTTCATAATGATGAGGAGGAAAAAGATACAAAAATGGTCAATGGGTTTAACACACCCATAATTCCAGCTAGGCAGAGATTAAAAGTATCTGCAATGAGGCCCATTCCTCATGCTCGTCGCCATAGAATGACACCCTTTTCTAGGCCTTCTGAGACAGATGGTTATGATGGTGCCCACATTGAGTCTAGTTTGCCACTTGTTCTCCCCACAAAGCGCAGTACTCCTGGATCAACTTCTGCAACACAGAGAAGATCATTTTCTAGCTCAGCTCAGTCTAAGCAGGTTATTTCCTTGAATCCACTACCCTTGAAAAAACATGGTTGTGGCAGAGGCTCAATACAGAGCTGCTCTGAGGAGGAATTTCTAAAAGATGTCATGGAGTTTTTAATTCTTCGGGGACATAGTCGACTAATTCCTCAAGGAGGGCTTACTGAGTTCCCTGATGCCATACTCAATGGGAAACGCCTTGATCTTTACAACTTGTATAAGGAGGTGGTTACCAGGGGAGGATTTCATGTTGGTAATGGCATCAACTGGAAAGGACAAATTTTCTCAAAGATGCGCAATTACACAACCACTAATAGAATGACGGGCGTTGGAAATACACTCAAAAGACATTATGAAACCTACCTTCTGGAATATGAATTAGCTCATGATGATGTGGATGGGGAGTGCTGTTTGTTGTGTCACAGTAGTGCCGCCGGGGATTGGGTGAATTGTGGAATTTGTGGCGAGTGGGCCCACTTCGGCTGTGACAGAAGGCAAGGTCTCGGTGCATTCAAGGATTATGCAAAAACAGATGGGCTAGAATATATATGTCCTCACTGTAGTGTTACAAATTTCAAGAAGAAACCCTCAGGTGTTGCTAATGGGTATTCTCAGGGATCAATGGCATCAAGACCCCTTTGA 2307 0.4257 MMFHPGGAAKQTCSLLAVACGESFEHEFEKKLQQSQPTYPFPELASAGRLEVLTINNPEKDEFRKTFEALQPNIVYLQGEQLVNGEVGSLVWQGEDLASSEAILELFGPTLPTAVYLEIPNGEALAEALYDKGVAYVIYWKNTFSCYAACHFRQAFLSVVQSSSTHTWDAFHLARASFELYCAQNNQILPSESHDASSKGPHLIGNCLKINIDPPEVFEDDEESSSGSLPSIKIHDDEVNLRFLICGAPSTVDVSMLRSLEDGLRALLTIEIRGSKLHGKFSAPPPPLQAATFSRGVVTMRCDMSTCSSAHISLLVSGSAQTCFNDQLLENHIKNEIIENSQLVHAEINEGNKQHVSEPRRSASIACGAAVFEVSMKLPQWALQVLRQLAPDVTYRSLVALGIASIQGLPIASFEKDDAERLLFFYQSHEKDSCENNIIFSNPPGWLKPPPPTRKRCEPSQEVSPGLHNDEEEKDTKMVNGFNTPIIPARQRLKVSAMRPIPHARRHRMTPFSRPSETDGYDGAHIESSLPLVLPTKRSTPGSTSATQRRSFSSSAQSKQVISLNPLPLKKHGCGRGSIQSCSEEEFLKDVMEFLILRGHSRLIPQGGLTEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTTTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVTNFKKKPSGVANGYSQGSMASRPL 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0580 768 SMART ARID_2 578 681 - -
Sto1g0580 768 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 758 IPR042293 -
Sto1g0580 768 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 6 758 - -
Sto1g0580 768 CDD PHD_ARID4_like 691 742 - -
Sto1g0580 768 SMART bright_3 582 686 IPR001606 GO:0003677
Sto1g0580 768 MobiDBLite consensus disorder prediction 534 558 - -
Sto1g0580 768 ProSiteProfiles ARID domain profile. 581 685 IPR001606 GO:0003677
Sto1g0580 768 MobiDBLite consensus disorder prediction 445 479 - -
Sto1g0580 768 Pfam ARID/BRIGHT DNA binding domain 584 681 IPR001606 GO:0003677
Sto1g0580 768 SUPERFAMILY FYVE/PHD zinc finger 684 748 IPR011011 -
Sto1g0580 768 CDD ARID 583 681 - -
Sto1g0580 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 748 IPR013083 -
Sto1g0580 768 SUPERFAMILY ARID-like 582 696 IPR036431 GO:0003677
Sto1g0580 768 Gene3D - 578 684 IPR036431 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0580 2 757 ARID Transcription Factor Family AT3G43240 62.024 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sto1g0580 ARID 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0580 - - gmx:100816540 1314.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0580 1 5513358 5523330 Sto1g0580 1 5513358 5523330 ECH