Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0576 ATGGAGTCTAAAGGAAACAAGCTTATCACACAAGTTCCAAATCGACAGAGAATGAAGCGCAAAACTGAAATAAAGAGATTGGAATCCAAATCCAAACTCCAGGTCACCTTCTCCAAACGCAAATTAGGCCTCTTCCGCAAAGCCgccgaactctctctcctctGCGATTCTCAAACCGCCGTTGTCGTTTTCTCTCAAAACGGTAAGATATTCTCCTCCGGCCATCCCGATCCGGACTCCGTCTTCAGCCGCTACCTCTCCCGCGCCTCCTCCCCCTCCTCAGATCCGTCCGAAGCCGAATCGACGACGGCCGCGGCGGCGCCGGTGATCCGGCAGTACGAAGAGGCGATGAAGGAATTGgaagaagagaaggagaagacgcTGGACGCGATGGTCGATGTTCTCGCGTCGGCGGCTTGCGGGAACGGATTCTGGTGGAACCGATCGGTTGAGGAGATGGATTTGGAGGATGCTTTGGAGTTCAAGAAGTGCGCGCAAGAGTTGAGAAGGAATTTGCTTGCCgagacggagaagaagaagaaggcggCGGCGGCCGGCGACCACGACTGA 570 0.486 MESKGNKLITQVPNRQRMKRKTEIKRLESKSKLQVTFSKRKLGLFRKAAELSLLCDSQTAVVVFSQNGKIFSSGHPDPDSVFSRYLSRASSPSSDPSEAESTTAAAAPVIRQYEEAMKELEEEKEKTLDAMVDVLASAACGNGFWWNRSVEEMDLEDALEFKKCAQELRRNLLAETEKKKKAAAAGDHD 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0576 189 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Sto1g0576 189 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Sto1g0576 189 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Sto1g0576 189 MobiDBLite consensus disorder prediction 1 20 - -
Sto1g0576 189 MobiDBLite consensus disorder prediction 1 15 - -
Sto1g0576 189 Coils Coil 110 137 - -
Sto1g0576 189 MobiDBLite consensus disorder prediction 82 105 - -
Sto1g0576 189 PANTHER MADS BOX PROTEIN 14 178 - -
Sto1g0576 189 SUPERFAMILY SRF-like 19 88 IPR036879 GO:0003677|GO:0046983
Sto1g0576 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Sto1g0576 189 Gene3D - 29 96 IPR036879 GO:0003677|GO:0046983
Sto1g0576 189 MobiDBLite consensus disorder prediction 84 101 - -
Sto1g0576 189 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 14 178 - -
Sto1g0576 189 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Sto1g0576 189 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Sto1g0576 189 Coils Coil 165 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0576 Sto-Chr1 5474289 5480744 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0576 19 174 Type I MADS-box Gene Family AT2G24840 34.810 6.65e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto1g0576 SRF-TF 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0576 - - ahf:112729126 111.694