Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0571 ATGATGAGGAAGGAGAGCTTGGGATTGGGAAGTTGGGATGAGATTAACAATGCAATGCCAAGAAGGTGCACCCACTGCCTGGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACActatgcaatgcatgtggattGAGCTTTATTTACAAAAACAAGGAGACCAAGAGAAAGTTGCTCAGAAAACTCCTGCCATGGAAGGTAGGTCCTCAAAGCTCCAAAGGTCCATTGGGTTTCCACCATCCTGAGTTCCGTTTCCACCAAGCAAGGTTTCTAAGGAATCGACACCCCAACCCCCATCAAGATAAGGCATCTGAAAGAACTGCAACTGGGATTCTATATCAAGTTCAGATTTGCATTGTAACGTTTTGGGGAAGCACCAGAAACCTCATCAGGGAAGTTCACCTTGGCTTTCTTGCCTCGAATCCTCCGTGCTTCAGCATCATAAGCTCTAGCAGCTTCTTCGGCAGTGTTGAAAGTTCCAAGCCAGACACGAACACCCTTTCTTGGGTCCCTGATCTCAGCTGCCCATTTTCCCCATGGGCGCTGACGGATTCCCCTATACTgattcttcctctttctcttctcaGACTTCACTTGCCCATTGGATTCCACAGATTTTACAGCTCCAGATCCTTCAATTTACCACTAGACAGGGATTTGGAAGGCTTGGAGTGGTTGATTGCGGAGAAAGCAAAGGGCTTGACATCAATTAGcaaatcatcatcttcatcgaCATCAAAATCGTCCTTGAATTGCCTAAAATCAGCTTCAAAATCATCGTCCAAATCTACGAACCCACCAGACCTAGAGGGCTTCGACGAGAATCGCTTCCTCGAGCTTGGTTTCTTCAATCCCGGCCAGAGATAA 882 0.4467 MMRKESLGLGSWDEINNAMPRRCTHCLAQRTPQWRAGPLGPKTLCNACGLSFIYKNKETKRKLLRKLLPWKVGPQSSKGPLGFHHPEFRFHQARFLRNRHPNPHQDKASERTATGILYQVQICIVTFWGSTRNLIREVHLGFLASNPPCFSIISSSSFFGSVESSKPDTNTLSWVPDLSCPFSPWALTDSPILILPLSLLRLHLPIGFHRFYSSRSFNLPLDRDLEGLEWLIAEKAKGLTSISKSSSSSTSKSSLNCLKSASKSSSKSTNPPDLEGFDENRFLELGFFNPGQR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0571 293 SMART GATA_3 17 74 IPR000679 GO:0006355|GO:0043565
Sto1g0571 293 PANTHER GATA TRANSCRIPTION FACTOR 17 52 - -
Sto1g0571 293 Pfam GATA zinc finger 23 52 IPR000679 GO:0006355|GO:0043565
Sto1g0571 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 66 - -
Sto1g0571 293 MobiDBLite consensus disorder prediction 242 277 - -
Sto1g0571 293 ProSiteProfiles GATA-type zinc finger domain profile. 17 50 IPR000679 GO:0006355|GO:0043565
Sto1g0571 293 ProSitePatterns GATA-type zinc finger domain. 23 48 IPR000679 GO:0006355|GO:0043565
Sto1g0571 293 Gene3D - 13 71 IPR013088 GO:0006355|GO:0008270
Sto1g0571 293 PANTHER GATA ZINC FINGER FAMILY PROTEIN, EXPRESSED 17 52 - -
Sto1g0571 293 MobiDBLite consensus disorder prediction 242 273 - -
Sto1g0571 293 CDD ZnF_GATA 22 63 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0571 Sto-Chr1 5411839 5415413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0571 21 52 C2C2-Gata Transcription Factor Family AT2G45050 78.125 3.53e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto1g0571 GATA 4.3e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0571 - - qsu:112040553 82.8037