Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0552 ATGGCCACCACCACAACCCCTGCGCCGCCGCGGCAGCTTTCGCAGAAGGAGGCTGACATCCAAATGATGTTGGCCGCGGAGGTGCATCTAGGAACAAAAAACTGTGATTTCCAAATGGAGCGATACGTCTTCAAGCGCCGTAACGATGGTATTTACATTATAAATCTTGGAAAAACATGGGAGAAGCTACAGCTTGCTGCTAGGGTCATTGTTTCCATTGAGAATCCACAGGATATTATTGTTCAGTCTGCCAGGCCATATGGTCAGAGAGCAGTTCTTAAGTTTGCTCAGTACACTGGCGCCCATGCAATTGCCGGAAGGCACACTCCTGGTACATTTACTAATCAGCTCCAGACATCATACAATGAGCCTCGACTTCTTATTCTAACCGATCCAAGAACAGATCATCAGCCCATTAAGGAAGCTGCTCTTGGAAATATACCAACAATTGCCTTTTGTGACACCGATTCTCCCATGCGTTATGTTGACATTGGGATTCCTGCCAATAACAAGGGGAAACATAGCATCGGTTGTCTCTTTTGGCTTCTAGCAAGAATGGTACTGCAAATGCGGGGGACTATTCTTCCGGGCCATAAGTGGGATGTTATGGTAAATTGCTTGTCACCCATATGA 633 0.466 MATTTTPAPPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSYNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILPGHKWDVMVNCLSPI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0552 210 Pfam Ribosomal protein S2 23 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 Pfam Ribosomal protein S2 120 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 PANTHER 40S RIBOSOMAL PROTEIN SA 12 204 IPR005707 GO:0003735|GO:0006412|GO:0015935
Sto1g0552 210 SUPERFAMILY Ribosomal protein S2 15 205 IPR023591 -
Sto1g0552 210 TIGRFAM uS2_euk_arch: ribosomal protein uS2 15 205 IPR005707 GO:0003735|GO:0006412|GO:0015935
Sto1g0552 210 ProSitePatterns Ribosomal protein S2 signature 1. 20 31 IPR018130 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 CDD RPS2 23 189 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 Gene3D - 19 208 - -
Sto1g0552 210 ProSitePatterns Ribosomal protein S2 signature 2. 124 148 IPR018130 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 PRINTS Ribosomal protein S2 signature 20 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 PRINTS Ribosomal protein S2 signature 50 59 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 PRINTS Ribosomal protein S2 signature 99 116 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 PRINTS Ribosomal protein S2 signature 124 141 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 PRINTS Ribosomal protein S2 signature 141 152 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 PRINTS Ribosomal protein S2 signature 162 176 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sto1g0552 210 Hamap 40S ribosomal protein SA [rps-0]. 7 210 IPR027498 GO:0003735|GO:0006412|GO:0015935
Sto1g0552 210 PANTHER 40S RIBOSOMAL PROTEIN SA 12 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0552 Sto-Chr1 5224137 5225564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0552 1 207 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 84.058 5.36e-135 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0552 K02998 - twl:119983185 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0552 1 5224137 5225564 Sto1g0552 1 5224137 5225564 ECH