Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0547 ATGGACGACGACGACAAGATCCAGTCGCCTCCGTCGCCGGCGAGTGGATCTCCGGGTTCGCCGAGGGCGAACGGAAGGATACGAGTGACGGTGGCTACGCCGGCGCCGGCGCAGAACAGCATGGCGCTGGCGCTTCCGGCCCAGAACCTGCAGCCGAAGGGTAATGGCGGTGGTGGGGGCGGCAGCGGCGGCGGTGGAGGGAGGGAGGATTGCTGGAGTGAAGGAGCGACGGCGGTGTTGATCGACGCGTGGGGAGAGAGGTACTTGGAGCTGAGTAGGGGGAATCTGAAGCAGAAGCACTGGAAGGAGGTGGCGGATATTGTGAGTAGCAGAGAGGACTACGGGAAGACGCCCAAGACTGATATTCAGTGCAAGAATCGGATCGACACGGTGAAGAAGAAGTATAAATTGGAGAAGTCGAAGATCGCGGTCGGGGCTGGACCTAGCAAGTGGCCGTTCTACGACAGACTGGACCAGTTGATCGGTCCGACTGCGAAAGTCTCCGGATCTACCGGCGGaaCCAGTGCTACAAACAATTCGCACATCCAGAAAGTGCCTCTTGGAATTCCAGTGGGAATTCGAGGAGGAGCGAATCAGAGTCAGTACCAAGCACATCACCAACGGCATCAGAAGCCCCAGCCACCACCACAGTTGAAGACTCAGAACCAGAAGATTCAGTTCCGGAAGCGAGCTCCGGTGGACTCCGATTCGTCCCCATCGGAGAGAGAATCATCGCCGGTTTCTAGCGATAGTTTTCCACCGGATACGTACGAGAGGAAGAGACCCAGAGTCCCTAGAGAGATCAATTCGGATGCTGTGGAAAGGAAGGAAAAGGGTTGGGGAAATGCAGTGAGGGAATTAACACAGGCGATACTGAAATTCGGGGAAGCCTATGAGCAAGCAGAGACCTCAAAGATTCAGCAGGTGGTGGAAATGGAGAAGCAGAGGATGAAGTTCACGAAGGATATGGAATTGCAGAGAATGCAGTTCTTCATGAAGACCCAATTGGAGATTTCGCAGCTGAAGCATGGGAggaaaaacGGGAGTAGCAACCATCATAGCAACATGAACGATAACAATAACAGTCATAGTGACAGCGATAACCTGGTTAGATTGGATTAG 1122 0.541 MDDDDKIQSPPSPASGSPGSPRANGRIRVTVATPAPAQNSMALALPAQNLQPKGNGGGGGGSGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYGKTPKTDIQCKNRIDTVKKKYKLEKSKIAVGAGPSKWPFYDRLDQLIGPTAKVSGSTGGTSATNNSHIQKVPLGIPVGIRGGANQSQYQAHHQRHQKPQPPPQLKTQNQKIQFRKRAPVDSDSSPSERESSPVSSDSFPPDTYERKRPRVPREINSDAVERKEKGWGNAVRELTQAILKFGEAYEQAETSKIQQVVEMEKQRMKFTKDMELQRMQFFMKTQLEISQLKHGRKNGSSNHHSNMNDNNNSHSDSDNLVRLD 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0547 373 MobiDBLite consensus disorder prediction 339 367 - -
Sto1g0547 373 MobiDBLite consensus disorder prediction 238 252 - -
Sto1g0547 373 MobiDBLite consensus disorder prediction 163 282 - -
Sto1g0547 373 MobiDBLite consensus disorder prediction 164 184 - -
Sto1g0547 373 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 2 342 - -
Sto1g0547 373 MobiDBLite consensus disorder prediction 1 70 - -
Sto1g0547 373 Pfam Myb/SANT-like DNA-binding domain 69 160 IPR044822 -
Sto1g0547 373 MobiDBLite consensus disorder prediction 196 228 - -
Sto1g0547 373 Gene3D - 72 137 - -
Sto1g0547 373 MobiDBLite consensus disorder prediction 254 282 - -
Sto1g0547 373 MobiDBLite consensus disorder prediction 339 373 - -
Sto1g0547 373 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 2 342 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0547 Sto-Chr1 5151078 5152259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0547 1 353 Trihelix Transcription Factor Family AT3G14180 48.157 8.30e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Sto1g0547 Myb_DNA-bind_4 1.7e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0547 - - gmx:100812599 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0547 1 5151078 5152259 Sto1g0547 1 5151078 5152259 ECH