Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0528 ATGGTTCCTCGCCCTTCTGTGTTAGTGAATACAACACAAACTTTTATCTTGATTTgttcctttttttctcttttctttttcacttttttatttttgcagATTGAACCAATCCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAGCCACTTTTGCAAGAAGTTTTTGCAAGTACTGGCCCAGTTGAAGGTTGTAAACTTGTTAGAAAGGAACAGTCATCCTATGGATTCATTCACTACTTTGATCGGAGATCTGCTGCTCTTGCTATTTTATCTCTCAACGGAAGGCATCTATTTGGACAGCCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGTCACTACAACATATTTGTTGGAGATCTCAGTCCTGAGGTTACTGATGCTACATTGTTTGCGTGCTTTTCTGTTTACCCCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGACGATCAAGGGGGTTTGGATTTGTTTCATTCCGTAACCAACAGgaTGCTCAAAGCGCCATAAATGATTTGACTGGTAAGTGGCTTGGTAGTAGACAGATACGCTGTAACTGGGCTACCAAAGGTGCTGGTTCTAGTGAAGACAATCAAAACGCAGACACCAAAAGTGTTGTTGAGCTAGCAAATGGGTCATCTGAAGATGGAAAGGAGACAACTAACAATGATGCCCCGGAGAACAATCCTCAATATACTACCGTCTACGTTACCCAACTTGATCTCCACCGCCATTTCCATGCTCTTGGGGCTGGAGTGATAGAGGAGGTTAGAGTCCAGCGTGATAAAGGCTTTGGTTTTGTTAGGTATAGTACTCAtgctgaagcagcactggctaTTCAGATGGGGAATACCCATTCTATTCTCTGCGGCAAACAAATTAAGGATAAGGCATTTGGATTTGGAAGTGTCTTCAGATTGTGTTCTTGGCAGGCTTGTTCTGTACTGTTTAATCAGGATTCTACGAAAGAGTCTCCTCTTGCTGAAGcatGTGACACCGTCATGTTATTGTCTCACATGAGAGGATCCAAATCCTTTCTTCACATCACAGAATGCTCCTGGGGAAACAAGCCTACTCCACCTGGAACTGCTTCAAATCCTCTTCCCCCACCAGCTGCTGCATCTCTGCCTGGCCTCTCTGCATCTAGTCTTTTGGCCTACGAGCGTCAGTTAGCAATGAGCAAGATGGTGGGTGTCCATAACCTAATGCATCAAGGACAGCATCCTCTTAAACAGGCAGCACTTGGAGGAAGCCAAGCAATATATGATGGTGGGTTCCAGAATGTTGCTGCAGCACAACAAATGATGTATTACCAGTGA 1395 0.4244 MVPRPSVLVNTTQTFILICSFFSLFFFTFLFLQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVEGCKLVRKEQSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGSSEDNQNADTKSVVELANGSSEDGKETTNNDAPENNPQYTTVYVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTHSILCGKQIKDKAFGFGSVFRLCSWQACSVLFNQDSTKESPLAEACDTVMLLSHMRGSKSFLHITECSWGNKPTPPGTASNPLPPPAAASLPGLSASSLLAYERQLAMSKMVGVHNLMHQGQHPLKQAALGGSQAIYDGGFQNVAAAQQMMYYQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0528 464 SUPERFAMILY RNA-binding domain, RBD 131 218 IPR035979 GO:0003676
Sto1g0528 464 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 29 320 - -
Sto1g0528 464 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 376 450 - -
Sto1g0528 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Sto1g0528 464 Gene3D - 235 323 IPR012677 -
Sto1g0528 464 Gene3D - 47 130 IPR012677 -
Sto1g0528 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 126 IPR000504 GO:0003723
Sto1g0528 464 CDD RRM2_PUB1 138 212 - -
Sto1g0528 464 Gene3D - 131 229 IPR012677 -
Sto1g0528 464 SUPERFAMILY RNA-binding domain, RBD 248 319 IPR035979 GO:0003676
Sto1g0528 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 319 IPR000504 GO:0003723
Sto1g0528 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Sto1g0528 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 120 IPR000504 GO:0003723
Sto1g0528 464 SUPERFAMILY RNA-binding domain, RBD 36 130 IPR035979 GO:0003676
Sto1g0528 464 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 29 320 - -
Sto1g0528 464 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 376 450 - -
Sto1g0528 464 SMART rrm1_1 259 322 IPR000504 GO:0003723
Sto1g0528 464 SMART rrm1_1 138 211 IPR000504 GO:0003723
Sto1g0528 464 SMART rrm1_1 53 122 IPR000504 GO:0003723
Sto1g0528 464 MobiDBLite consensus disorder prediction 235 255 - -
Sto1g0528 464 CDD RRM1_TIA1_like 54 124 - -
Sto1g0528 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 320 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0528 Sto-Chr1 4954877 4959877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0528 53 327 Eukaryotic Initiation Factors Gene Family AT1G49760 25.773 2.41e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0528 K13201 - jre:109004964 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0528 1 4954877 4959877 Sto1g0528 1 4954877 4959877 ECH