Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0527 ATGTCGACTTTCTCCGATACGGCGGCGAGTGGTGGCCGGAGGGCGGCCGGCAAGGCGGCGGAGAGGTGTAATCTCATAAGCCAGTTCTTGAAGGAGAAGAGAAGCTCTGGAGGAGCTTTGAGCCTTGTAATGGCAGCTACGATGAATTTGTTAACAAATCTGGAAAAGTCTGAAGATGATGCTTCAAAACAAAATGCTTCTCTTTCTCAGATGGTGGAAAACCTTTCTGATTTCAGGAATCCGGCGAAAACGGAGTCCAAAACTCCCCAGATGGCGATATTCTACGCCGGGAAAGTGTTGGTGTTCGATGCTTTTCCGCCAGAGAAGGCGACGGAGATCATGGAGCTAGCCACCAAGTTAAGCTCTAATAAGAATAATCCTGTGGCTTCTGAAAATTTGAACAAGGTGGTGTCTCAAACTACTACTTCCCAAGAAGCATCTAGACCAAGATCTCAAACTTTTGGTtcagATATGAGGTACCCAAGGAGAGCTTCACTTGTAAAATTTctggagaaaagaaaagaaagGGTTATAGCAAGAGGACCTTACCACCAGATGAACCCTAAGCAAGAGGGAGGAAGCAACTCTTCTGGAGATCAAATTGAAGATGAATCTTGCAAACCCTTTGACCTAAACTTATAA 642 0.4393 MSTFSDTAASGGRRAAGKAAERCNLISQFLKEKRSSGGALSLVMAATMNLLTNLEKSEDDASKQNASLSQMVENLSDFRNPAKTESKTPQMAIFYAGKVLVFDAFPPEKATEIMELATKLSSNKNNPVASENLNKVVSQTTTSQEASRPRSQTFGSDMRYPRRASLVKFLEKRKERVIARGPYHQMNPKQEGGSNSSGDQIEDESCKPFDLNL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0527 213 Pfam Jas motif 162 183 IPR018467 -
Sto1g0527 213 MobiDBLite consensus disorder prediction 188 202 - -
Sto1g0527 213 Pfam tify domain 86 117 IPR010399 -
Sto1g0527 213 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 20 204 - -
Sto1g0527 213 MobiDBLite consensus disorder prediction 137 154 - -
Sto1g0527 213 ProSiteProfiles Tify domain profile. 84 119 IPR010399 -
Sto1g0527 213 MobiDBLite consensus disorder prediction 178 213 - -
Sto1g0527 213 MobiDBLite consensus disorder prediction 137 158 - -
Sto1g0527 213 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 204 IPR040390 -
Sto1g0527 213 SMART tify_2 84 119 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0527 Sto-Chr1 4945422 4947414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0527 11 188 Tify Gene Family AT1G19180 32.735 5.02e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Sto1g0527 tify 1.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0527 K13464 - gmx:100778559 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0527 1 4945422 4947414 Sto1g0527 1 4945422 4947414 ECH