Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0495 ATGAGTAATTGGATGGGGTTTTCTCTGACTCCTCACTTGAGGATTGATGATGTATATGGAAATGGCAGAGAAAaccaagaagaagaacaagaccatcatcaccaccaccaccaccaccaccgtgaagcctttcttcctcctcctcctcatcctCACCGTTTATCTGTTATGCCCTTGAGATCAGACGGCTCTCTCTGTGTTTCAGATCCTCTAGattggagatatgatAGTGGGGTGGTTGTTTCTGGAGCAAACTCaaatgatcatcatcatcatcatcatcatcatcaagaaGGTCCAAAGCTTGAAGATTTCTTGGGTTGCTACTCAAACTCTTCCAATATTGATGAATCCACTAAAGTCTAttgccatcatcatcatcaagacCAAAGCAACATTTGCAGTAGAATCAATATGAATGTGACCCCTCATGGGGAAAATCTCACAAACCCATCTTCTATAATCCAATCTTTCCATGCATCATCATACAATGATAGCAATAGtagtaatagtaataataatagtagtaaTAATAATGGGTTTAACTATCAATCTCTGTCTCTAACTATGAGTCCTAGTACTGTGCAAAATGGGGTGTGTGGTGCAATTTCTGCTGTTCAAGTAGTGAATGATATTGATTCTCGTAAAAGGTCTATCACAAAATCTTCTCTTGCTGTTAGAGAGCCTATGCCTCGCAAATCCATTGACACTTTTGGCATAGATGGACTGGGAGGTATGAGGCCCATTTGTGGGATAATAGTTGCAGGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACTACTCACATAAATTTCCCTCTATATAACCCGAGCCTCGAACCAATGGTAAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGGGGTGTGACAAGACACCATCAACATGGAAGGTGGCAAGCTAGGATTGGTAGAGTTGCAGGAAACAAAGACTTGTATCTTGGTACTTTCAGCACACAAGAGGAAGCTGCAGAAGCGTATGACATAGCAGCGATCAAATTCAGAGGGACAAGTGCTGTGACCAACTTTGACATTAGCCGATATGACGTGAAGAGAATATGCTCCAGCTCCACTCTCATCGCAGGAGATCTCGCAAAAAGATCATCCCCAAAACacccttcccctcctcctccttcagGGGAAGTCGTCACTCTAGCTGACGACTTCAACTCTTGTGTTCCGTCAACCTCTCTGACGACTTCCACCCAACAACACTCCTCTGACGAGTTAGCCAACATGGTGTGGAACAACGATAATAACAACAGCAAgaacattattattaataatccagaagatgatgaagaaagcGTCAAGTGTTCCGTGGGGATCGGGAATCATCATGACGAGTTTGGGTTCTTCTCGCCAAAATATAacgatggtggtggtgatgatgatgatgatggtggtgggaACAACGagaatggtggtggtggtggcaatgATAATCGTATTGGGAATATGGGTTTGGTTCATCAAGTTCCTATGTTTGCTTTatggaatgaatga 1587 0.3459 MSNWMGFSLTPHLRIDDVYGNGRENQEEEQDHHHHHHHHHREAFLPPPPHPHRLSVMPLRSDGSLCVSDPLDWRYDSGVVVSGANSNDHHHHHHHHQEGPKLEDFLGCYSNSSNIDESTKVYCHHHHQDQSNICSRINMNVTPHGENLTNPSSIIQSFHASSYNDSNSSNSNNNSSNNNGFNYQSLSLTMSPSTVQNGVCGAISAVQVVNDIDSRKRSITKSSLAVREPMPRKSIDTFGIDGLGGMRPICGIIVAGRKGKQGKEDKEEKAARAYDLAALKYWGPTTHINFPLYNPSLEPMVRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSSPKHPSPPPPSGEVVTLADDFNSCVPSTSLTTSTQQHSSDELANMVWNNDNNNSKNIIINNPEDDEESVKCSVGIGNHHDEFGFFSPKYNDGGGDDDDDGGGNNENGGGGGNDNRIGNMGLVHQVPMFALWNE 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0495 528 Pfam AP2 domain 312 363 IPR001471 GO:0003700|GO:0006355
Sto1g0495 528 CDD AP2 312 373 IPR001471 GO:0003700|GO:0006355
Sto1g0495 528 Gene3D AP2/ERF domain 313 373 IPR036955 GO:0003700|GO:0006355
Sto1g0495 528 Gene3D AP2/ERF domain 247 293 IPR036955 GO:0003700|GO:0006355
Sto1g0495 528 MobiDBLite consensus disorder prediction 480 513 - -
Sto1g0495 528 PANTHER PUTATIVE, EXPRESSED-RELATED 5 239 - -
Sto1g0495 528 PANTHER PUTATIVE, EXPRESSED-RELATED 257 465 - -
Sto1g0495 528 MobiDBLite consensus disorder prediction 24 51 - -
Sto1g0495 528 SUPERFAMILY DNA-binding domain 312 373 IPR016177 GO:0003677
Sto1g0495 528 SMART rav1_2 257 297 IPR001471 GO:0003700|GO:0006355
Sto1g0495 528 SMART rav1_2 313 377 IPR001471 GO:0003700|GO:0006355
Sto1g0495 528 ProSiteProfiles AP2/ERF domain profile. 195 291 IPR001471 GO:0003700|GO:0006355
Sto1g0495 528 ProSiteProfiles AP2/ERF domain profile. 313 371 IPR001471 GO:0003700|GO:0006355
Sto1g0495 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 257 465 - -
Sto1g0495 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 239 - -
Sto1g0495 528 SUPERFAMILY DNA-binding domain 255 292 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0495 Sto-Chr1 4515422 4518861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0495 1 395 AP2-EREBP Transcription Factor Family AT1G72570 41.489 7.83e-82 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto1g0495 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0495 K09285 - gmx:100809762 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0495 1 4515422 4518861 Sto1g0495 1 4515422 4518861 ECH