Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0486 ATGGCGACCCAAATGAGCAAGAAGCGAAAGTTTGTAGCAGATGGAGTTTTCTTCGCGGAGCTGAATGAAGTTCTGACCAGAGAACTTGCAGAGGATGGCTATTCTGGGGTTGAAGTTAGGGTTACGCCCATGCGCACTGAGATTATCATTAGGGCCACTCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGAAGGATTAGGGAACTGACTTCTATTGTTCAGAAGCGTTTTAAGTTCCCTGAGAACAGTGTTGAGCTTTATGCTGAGAAAGTCAATAACAGAGGGCTCTGTGCTATTGCTCAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGACTTGCTGTCCGAAGGGCTTGCTATGGTGTACTAAGGTTTGTGATGGAAAGTGGAGCCAAAGGTTGTGAGGTTATTGTTAGTGGCAAGCTCAGGGCTCAGCGTGCCAAATCCATGAAATTCAAGGATGGGTACATGATTTCATCTGGTCAGCCTGTCAAGGAATATATTGACTCTGCTGTTAGACACGTGCTTCTGAGACAGGGTGTTCTTGGGATCAAGGTGAAAATTATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCCAACTAAACCCATCCCGGATTTGGTAACCATCCATCCGCCAAAGGAGGAAGAGGATTACACCGTGAGACCTTTGCAACAACCCGTGCCCACTCCTGCGCCCGTGCCTACGAACATAGAGATCCCAGCAGTTTAG 732 0.4836 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSIVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPIPDLVTIHPPKEEEDYTVRPLQQPVPTPAPVPTNIEIPAV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0486 243 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Sto1g0486 243 CDD 40S_S3_KH 15 95 - -
Sto1g0486 243 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 228 - -
Sto1g0486 243 Pfam KH domain 20 93 IPR004044 GO:0003723
Sto1g0486 243 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Sto1g0486 243 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 191 IPR005703 GO:0003735|GO:0006412|GO:0015935
Sto1g0486 243 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Sto1g0486 243 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Sto1g0486 243 MobiDBLite consensus disorder prediction 224 243 - -
Sto1g0486 243 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Sto1g0486 243 Gene3D - 93 219 IPR036419 -
Sto1g0486 243 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 228 - -
Sto1g0486 243 Gene3D - 1 91 IPR015946 -
Sto1g0486 243 MobiDBLite consensus disorder prediction 226 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0486 Sto-Chr1 4404145 4405784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0486 1 243 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 83.740 6.37e-150 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0486 K02985 - dct:110106767 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0486 1 4404145 4405784 Sto1g0486 1 4404145 4405784 ECH