Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0485 ATGGAAACCGTGGTTGTAATTAACGATAATGAAGGGAGGCTTGAATACAGTGGGGCTGATAGAAGTAGCTCTGCTTTGTCTTCACCGAAGCAGATTGCTAACCAAGTTGTGTACAAGCTTGTTCGGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATAGAGGTGGAGGATTTTCTTGAGTATGACGAGAGTGAAATGCATGTTGTTGCAGACAGTGGGCAGAATGTAGAGTGCTTATTGGTTGAAAGATCATCCTTGGGGAAGCCTCAATTGGAGTGCTCAGAAGATCTATCAAAATCAAATAATGAAGAGGCAGATCTGTGGAAATTGAATGCGCAGCTTCAGGAAGAGAAGCATGATTTGGTTTGTGGATCACCTGGCCATTCTTATGTCAATGTTGACAGCCAATCTTTTGCTGATAAATTGCCTGTCATTGATGGGAAGATTCAAGCTGAAATTCCCTCCACAGAAATCGCTTCTTCCAGAACTTCAGGAGGACTAATAGATAGTGGATCATCTGCTTTGGCGGTCTGTTCTAACTTGAAGCCTGATTTTTCATTGTTAAAAGGAGAAATATGCTTGGACAAGCTATCAATCAGAGAACTTCACGAATTGTTTAAAGTGACTTTCGGTCGTGAAACTACTGTAAAAGACAAGCAGTGGCTGAAGCGGAGGATTTCCATGAGTTTAACTAACTCATGTGATGTCTCAACAACTTCCTTCATAGTTGAAGATAacaaattagttaaaaaaagcGAGGAAAATAATTGTGGGAATGTGGATACTGTGCTTTCTAGGGATATTACAGCTGGAGGAGAGTATAGCAACTGCAAGGATTTATCAAATACTGAGGGTAGTGGAATTGAAGATAATCTAGTGGTTTCTGGATATGTACCGAAAAATCATGATACAGATCATGAATTGGGACATGAGGACCTTCAGACAGAACAAAGAGCTCCCAAAAGAATGAGGAAACCCACAAAGAGATATATTGAAGAGTTTTCTGAATATGAATCAAGAGACCACCATCCAAGGttgttaaattcaaataaaagctTGGGACTTGGACATATTTCTCCAAAGTCCTGCAACAAGGCTGCTAGGAATGTTTTTTCAGAGGGGAGAACAGTAATTACTAGGTTGGATTCTCTTGGAAGTTCTGAGATTCACATTCCTTGTGTTTCTAGGGTTCGGAGAAGTCGACCAAGAAAAAACATAATGTCTCTCATAAACTTTCATACTAGCGGCATGAGGGAGGTGGAAAAATTGGGTTATAAGGCCCTTGGAGAGCATGCTTCTCAGGCTGCTAGAGGGAGCCAAGATGAAGCATTGAAATCTACCTCTACACCTGCAAAGTTTCAGCAGCCAGTAAGACCAACTGTGCCTCTGCTAATAGTATCTGCTGCTGAACCTGTGAAAAATAAGCTGGGCCCAGTAATGGGTACAGTTGAGCTACAGCAGGAATTGAGACCAAAAAAGCCAGATTCATCTAGCTATACTTTGGATGACAATTTAGTTACTATTCCTGTTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCATGGACTCTTGTTGAAGTAATGAAATTGGTTGAAGGTGTATCTCGTTGTGGAGCAGGGAAGTGGTCTGAGATCAAACGACTTGCCTTTGCATCCTACTCACATCGTACATCTGTTGATCTTAAGGATAAATGGAGGAATTTGCTTAAAGCTAGCTTTGCACCTATGCCTGCAGATGAGAGGGTTTCTGAAATCCCTTGTCCTCTACCTTTGCATGCTGCTCTAAAGAGTAGAAGTGCCAATATTGTCCCTTATTTCCAGTACGTGCATTTATTTATTCCAAAACTCTGGTTTAGTCTATTACATTATCATCATTCCGGTGTTGTATCGAAGGTAGAATGCTCTGGTTTGCTTGTACTTGTGGGTTTCAAATTCATCCAGTTTCTGTACTga 1971 0.4064 METVVVINDNEGRLEYSGADRSSSALSSPKQIANQVVYKLVRVEGDGRLVPATDDEVIEVEDFLEYDESEMHVVADSGQNVECLLVERSSLGKPQLECSEDLSKSNNEEADLWKLNAQLQEEKHDLVCGSPGHSYVNVDSQSFADKLPVIDGKIQAEIPSTEIASSRTSGGLIDSGSSALAVCSNLKPDFSLLKGEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRISMSLTNSCDVSTTSFIVEDNKLVKKSEENNCGNVDTVLSRDITAGGEYSNCKDLSNTEGSGIEDNLVVSGYVPKNHDTDHELGHEDLQTEQRAPKRMRKPTKRYIEEFSEYESRDHHPRLLNSNKSLGLGHISPKSCNKAARNVFSEGRTVITRLDSLGSSEIHIPCVSRVRRSRPRKNIMSLINFHTSGMREVEKLGYKALGEHASQAARGSQDEALKSTSTPAKFQQPVRPTVPLLIVSAAEPVKNKLGPVMGTVELQQELRPKKPDSSSYTLDDNLVTIPVAKGGMRRKHHRAWTLVEVMKLVEGVSRCGAGKWSEIKRLAFASYSHRTSVDLKDKWRNLLKASFAPMPADERVSEIPCPLPLHAALKSRSANIVPYFQYVHLFIPKLWFSLLHYHHSGVVSKVECSGLLVLVGFKFIQFLY 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0485 656 CDD SANT_TRF 526 576 - -
Sto1g0485 656 Gene3D - 516 608 - -
Sto1g0485 656 SMART sant 524 577 IPR001005 -
Sto1g0485 656 Pfam Myb-like DNA-binding domain 527 575 IPR001005 -
Sto1g0485 656 SUPERFAMILY Homeodomain-like 522 581 IPR009057 -
Sto1g0485 656 PANTHER TRF-LIKE 3 1 594 - -
Sto1g0485 656 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 520 579 IPR017930 -
Sto1g0485 656 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 594 - -
Sto1g0485 656 ProSiteProfiles Myb-like domain profile. 528 575 IPR001005 -
Sto1g0485 656 MobiDBLite consensus disorder prediction 308 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0485 Sto-Chr1 4394456 4401899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0485 528 574 Single Myb Histone (SMH) Gene Family AT1G72740 48.980 2.91e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto1g0485 Myb_DNA-binding 9.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0485 - - gmx:100775511 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0485 1 4394456 4401899 Sto1g0485 1 4394456 4401899 ECH