Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0472 ATGGCTCGCTTGCTAAAGGATGGTTCTCTTCAAGGGCAGAGGTCTGGTGTAGAATCTGTGAGCAAGGCTCCTATACCGACACATATTGTATTTGGCGATGAACTTGTACAAATTGTAGCACAGGATGTTGTTGTTACACGAGACGGCCTACCTAATGAGGCACACCATGAAATGCATCAGGAGATTATGGTTGATTCAGCAATATCTCAATCTCGTCATGTTGAGATAGGGAGAGAACTACAACCTTGGGTACCTGATGGAGATGATCAACAATGCCCTGAACTGGAAAATATATTTGATGGTCCTTGGAATAGCACATTCAACGAGGAACTGTATACAACAAAGCTTGCAAAAGGGCCACAAATGAGAGAGTTGGAAAAACAAGCTATGAGAATAGCAAGAGAAATTGAGGGCGAGGAAACCCAGGATCTTCATCTAGCAGAGGAAAGAGGTATTCACCTTCATGAAAACTTTGACATAGATGAAGAGACCAGATTCTCTTCAGTCTATAGAGGTAAAGAGGTTGATGACAGTGGATATGATGAAGCCGAGAACATTTTGTCGGATTCCCGAAATTCTGAAACATTTGGTGATACATTTGCTTCGGTCATCAAGAAATCCAGTGATGTAACTGGTGGAAAAAGCAATGATGGAGCTCGAATATCATCAAATTCCTCATTAATGGATATCTCTCAGTCATCCCAGTCAGATGTTGGTGTGGATTTAAGCCGCTCTGGTTCCTATGATCATGCTAAACAATTAGCATCTAAGCTCCCTTGCAAAAGTCACCCGTCTTTGGATGGTGAAAGAAGGGTTCAAGACAATTCGGTTGCTCAAGATGGAGCCAATGATACTATCAAGGAAGAAAATCAGGAAGCTGAGGATGTTGAACAGTCAAAATCTGAagATTCACAGTCATTGCTTGACTTGAAGAAATATGGTTCTGATAAAGTTTCATTATCTCTAAACACTTCCTCCCATGCCCCACCGTCTCGTGTATTATCAACTACACAGGAAAAGTCAGTATCACCTGGTGATTTGACTGAGAGTTCAGCTTCCGGCAAAGTTAACAGTGAAACCAAGCCTATAAACACTCGTGGAAGACCTGGTAGTTCTGCATCATCTGGTTCAGAGTGTGTGGGAGGTTTGGCAGCATCTTCTGGCCCTGGTCTCTCACCAAGTTCTTCAGTTGGCTCATTATCTTCTGAAAGATCGACACTGAATCCCAATGCTAAGGAATTCAAGCTGAACCCCAATGCGAAGAGTTTCATTCCATCATCTCAAGCGCCTCTTACGCCTATGTCCCCAGTGTCTGATGGTTCCTTCTATTTCCCAGCTAATGTAACTAGTCTATCTCATATGCCAGCCATGCCCATTAGTTATGGATATGGACAGTTTATTGGTCATCCCAGGCAAGTCATGTACATGCCACCAGGTCCTTTTTCTATCCAGTTTAGCAATTCTACTGCTCATTCAACATATAGCAGAACCGAGGGAAAGTCCATGGGAGGTCTCGTCAGTTCATCTGTGGGGAGACCGGATTTTGCCTTTCCCTCTCCACAACTGGATCCTACTCAATCAATTGCTCATATTGCGCTCTGTGACGCCAAGTCATACTTTGGTGGCCTTCTAACTACTGCATATGGACCACAACAGTCTAAGATTCATCATGCTCATGCTCAACTTGTGGGAATGGCTCCTCTTCGAGTTCCGCTCCCACTTGACCTAACAGAAGAACCCATATTTGTGAATGCAAAACAGTATCATGCTATTTTGAGGCGAAGAAAGTATCGTGAAAAACTTAAAGCACAGAACAAGATCGACAAAACTCGGAAACCATATCTTCATGAGTCCCGGCATCTACATGCCTTGAAGAGGGTCCGAGGTTCCGGTGGCCGCTTCCTCAACACCAGAACAACGCACCAAGAATCGCGGTCCACTTCATCCGGCCAACGCTGCCTAGATGTTTCCGGCTACCCCCGGATGAACCATCAGAGTGGTAATATGTCAAAGACCTGCAGAGATGGTGCTTCCACCACGACGTGTTCCGATGTCACGAGTGCCTCGAACAGCGACGACATGTTCCACCAGCAACAGGAGTCCGATTTCAGGTTCTTCGGAAGCAACATGCAAGGTTACTCAGGTGATATGGGTGGTCATgagaatcatcatcatcagcacCGTTTATCTGTCTTCATGTGA 2202 0.4432 MARLLKDGSLQGQRSGVESVSKAPIPTHIVFGDELVQIVAQDVVVTRDGLPNEAHHEMHQEIMVDSAISQSRHVEIGRELQPWVPDGDDQQCPELENIFDGPWNSTFNEELYTTKLAKGPQMRELEKQAMRIAREIEGEETQDLHLAEERGIHLHENFDIDEETRFSSVYRGKEVDDSGYDEAENILSDSRNSETFGDTFASVIKKSSDVTGGKSNDGARISSNSSLMDISQSSQSDVGVDLSRSGSYDHAKQLASKLPCKSHPSLDGERRVQDNSVAQDGANDTIKEENQEAEDVEQSKSEDSQSLLDLKKYGSDKVSLSLNTSSHAPPSRVLSTTQEKSVSPGDLTESSASGKVNSETKPINTRGRPGSSASSGSECVGGLAASSGPGLSPSSSVGSLSSERSTLNPNAKEFKLNPNAKSFIPSSQAPLTPMSPVSDGSFYFPANVTSLSHMPAMPISYGYGQFIGHPRQVMYMPPGPFSIQFSNSTAHSTYSRTEGKSMGGLVSSSVGRPDFAFPSPQLDPTQSIAHIALCDAKSYFGGLLTTAYGPQQSKIHHAHAQLVGMAPLRVPLPLDLTEEPIFVNAKQYHAILRRRKYREKLKAQNKIDKTRKPYLHESRHLHALKRVRGSGGRFLNTRTTHQESRSTSSGQRCLDVSGYPRMNHQSGNMSKTCRDGASTTTCSDVTSASNSDDMFHQQQESDFRFFGSNMQGYSGDMGGHENHHHQHRLSVFM 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0472 733 MobiDBLite consensus disorder prediction 321 418 - -
Sto1g0472 733 MobiDBLite consensus disorder prediction 321 381 - -
Sto1g0472 733 MobiDBLite consensus disorder prediction 633 680 - -
Sto1g0472 733 SMART cbf3 576 637 IPR001289 GO:0003700|GO:0006355
Sto1g0472 733 Coils Coil 122 142 - -
Sto1g0472 733 MobiDBLite consensus disorder prediction 661 680 - -
Sto1g0472 733 Coils Coil 279 299 - -
Sto1g0472 733 SMART LsmAD_2 104 172 IPR009604 -
Sto1g0472 733 MobiDBLite consensus disorder prediction 285 305 - -
Sto1g0472 733 MobiDBLite consensus disorder prediction 388 418 - -
Sto1g0472 733 ProSiteProfiles NF-YA/HAP2 family profile. 577 637 IPR001289 GO:0003700|GO:0006355
Sto1g0472 733 MobiDBLite consensus disorder prediction 208 242 - -
Sto1g0472 733 MobiDBLite consensus disorder prediction 633 654 - -
Sto1g0472 733 PRINTS CCAAT-binding transcription factor subunit B signature 580 602 IPR001289 GO:0003700|GO:0006355
Sto1g0472 733 PRINTS CCAAT-binding transcription factor subunit B signature 611 634 IPR001289 GO:0003700|GO:0006355
Sto1g0472 733 Pfam LsmAD domain 104 171 IPR009604 -
Sto1g0472 733 Pfam Ataxin-2 C-terminal region 414 428 IPR009818 -
Sto1g0472 733 Gene3D - 577 638 - -
Sto1g0472 733 PANTHER ATAXIN 2-RELATED 1 567 IPR045117 GO:0003723
Sto1g0472 733 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 579 634 IPR001289 GO:0003700|GO:0006355
Sto1g0472 733 PANTHER ATAXIN-2 HOMOLOG 1 567 - -
Sto1g0472 733 MobiDBLite consensus disorder prediction 208 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0472 Sto-Chr1 4186580 4205578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0472 505 651 CCAAT-HAP2 Transcription Factor Family AT1G54160 52.027 1.03e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Sto1g0472 LsmAD 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0472 - - gmx:100812754 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0135 9 1256093 1262039 Sto1g0472 1 4186580 4205578 CCT
Sto1g0472 1 4186580 4205578 Sto1g0472 1 4186580 4205578 ECH