Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0471 aTGGACGCGCGAACGCAGTATAATCCTCGCACTGTTGAAGAAGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGGCTGATTAAAGCCCTCACGACGGATGTTGAAGAATTTTACAACCAATGTGATCCTGaaaaggagaatttgtgcTTGTATGGATTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCCGAAGAAGTTCCTCCAGAGCTTCCCGAGCCTGTTCTGGGCATTAATTTTGCCAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCCATTGCCTTCTATTTTGGAGCTAGGTTTGGGTTTGATAAAGCTGACAGGAAACGGCTTTTCAATATGATCAATGACCTGCCAACAATTTTTGAAGTTGTTACTGGTACAGCAAAGAAGGAAGTTAAGGAGAAGTCTTCAGTTTCAAATCACAGTGGCAGCAAATCGAAGTCCAGCTCTAAAGtgCAGCGAGCTTCAGAAACTCAGGGTAGACAATCAAAGGCACCGCAACCGAAAGATGAGGAGGAACTAATGGATGAGcaggatgaagaagatgaacacGGGGATACGTTGTGTGGGGCATGCGGCGAGAATTACGGCACTGACGAATTCTGGATTTGCTGTGACATCTGCGAGAAATGGTTCCATGGGAAATGCGTGAAGATTACCCCTGCAAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGCAACAAGAGAGCTCGTCCCTGA 768 0.4375 MDARTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGTAKKEVKEKSSVSNHSGSKSKSSSKVQRASETQGRQSKAPQPKDEEELMDEQDEEDEHGDTLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0471 255 MobiDBLite consensus disorder prediction 154 176 - -
Sto1g0471 255 SUPERFAMILY FYVE/PHD zinc finger 190 252 IPR011011 -
Sto1g0471 255 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
Sto1g0471 255 PANTHER CPG BINDING PROTEIN 3 255 IPR045104 GO:0006355|GO:0042393
Sto1g0471 255 Pfam PHD-finger 202 251 IPR019787 -
Sto1g0471 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 250 IPR013083 -
Sto1g0471 255 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Sto1g0471 255 CDD PHD_AL_plant 201 251 IPR044104 -
Sto1g0471 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Sto1g0471 255 SMART PHD_3 201 249 IPR001965 -
Sto1g0471 255 MobiDBLite consensus disorder prediction 145 193 - -
Sto1g0471 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0471 Sto-Chr1 4176170 4181872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0471 7 254 Alfin-like Transcription Factor Family AT3G42790 75.403 2.69e-127 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Sto1g0471 Alfin 1.7e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0471 - - gmx:100170700 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0138 9 1272211 1276335 Sto1g0471 1 4176170 4181872 CCT
Sto9g0138 9 1272211 1276335 Sto1g0471 1 4176170 4181872 ECH
Sto1g0471 1 4176170 4181872 Sto1g0471 1 4176170 4181872 ECH