Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0440 ATGGGGAATCAGAAGCTGAAATGGACGGCGGAGGAAGAAGAAGCCTTGCTCGCCGGAATTGCGAAGCATGGCCCCGGCAAGTGGAAGAACATTCTCAAAGATCCCGAATTCGCACCTTTTCTCACTCACCGTTCCAACATCGACCTTAAGGATAAATGGCGAAATTTAAGTGTTAGTACTGTTGCTCAAGGCTCAAAAGAAAAAGTGAGGAATCCCAAGATTAAAGCTATGGTACCTGCTCCAATTTCCGGTGTACAAAATGCATCTTCTGCTACTCCGCTTAATCAATCTGCAACTTCTGATGCTGTGATGGATGATCCTTCTCAAAATGCCCAGGATGTCATACCTGCCTCACgGTATGATGCAATGATTTTTGAAGCTCTTTCAACGATAAAAGATTCCAATGGCTCTGACATAAGTGCCATCGTTAGTTTCATCGAGCAAAAGCATGAGGTTCCTCCAAATTTCAGACGGAATTTAACTTCAAGGTTGAGGAGGCTTGTTGGTTATGGGAAACTTGAAAAGGTACAAAACTGTTATAAGATTAAAAAGGACACACCTTTGGCAACAAAAACACCTGCACCTAAACAAAAAGATGTCTGGCCACGACAACCACCAGCTTCCGGTGTTGTGGCTTCCAATGATACAGTAGCGGATGCTGCTGAGACTGCAGCATACAGAGTTGCTGAAGCAGAGAACAAATCATTTTTGGCTGCCGAAGCAGTGAAAGAGGCAGAAAGATTTTCAAAGTTGGCTGAGGATACTGATTCAATATTACAGCTAGCGAAAGAGATTTATAAACAATGTTCACGGGGTGAAATTATCCACTTGGCCTAA 837 0.4325 MGNQKLKWTAEEEEALLAGIAKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVSTVAQGSKEKVRNPKIKAMVPAPISGVQNASSATPLNQSATSDAVMDDPSQNAQDVIPASRYDAMIFEALSTIKDSNGSDISAIVSFIEQKHEVPPNFRRNLTSRLRRLVGYGKLEKVQNCYKIKKDTPLATKTPAPKQKDVWPRQPPASGVVASNDTVADAAETAAYRVAEAENKSFLAAEAVKEAERFSKLAEDTDSILQLAKEIYKQCSRGEIIHLA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0440 278 MobiDBLite consensus disorder prediction 188 211 - -
Sto1g0440 278 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 277 - -
Sto1g0440 278 Gene3D - 8 88 - -
Sto1g0440 278 SMART h15plus2 116 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto1g0440 278 CDD SANT_TRF 7 56 - -
Sto1g0440 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Sto1g0440 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
Sto1g0440 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto1g0440 278 Gene3D - 116 199 IPR036388 -
Sto1g0440 278 Pfam linker histone H1 and H5 family 119 177 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sto1g0440 278 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Sto1g0440 278 SUPERFAMILY "Winged helix" DNA-binding domain 117 196 IPR036390 -
Sto1g0440 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Sto1g0440 278 SMART sant 4 59 IPR001005 -
Sto1g0440 278 SUPERFAMILY Homeodomain-like 3 58 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0440 Sto-Chr1 3820957 3825194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0440 1 277 Single Myb Histone (SMH) Gene Family AT1G17520 52.740 8.88e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto1g0440 Linker_histone 2.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0440 K09422 - jre:109002017 375.555