Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto1g0437 | TTGCTTTTTGCAGTGATGGCAGGTTTGGCTCCAGAAGGAACACAGTTTGATGCTCGTCAATATGATGCTAAGATGAGTGAATTGCTTGCCACTGATGGCCAAGAATTCTTCACCTCATATGATGAAGTCTATGATACTTTTGATGCAATGGGGTTACAAGAAAATCTTTTAAGAGGCATTTATGCTTATGGTTTTGAGAGGCCTTCGGCAATCCAACAAAGGGGAATTGTTCCATTCTGCAAAGGTCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAAACAGCAACATTTTGTTCTGGAATTCTTCAGCAACTTGATTATGGATTGGTTCAATGCCAGGCTTTAGTTTTGGCACCAACAAGGGAACTAGCACAGCAGATTGAGAAAGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAGGTCCATGCTTGTGTAGGTGGCACTAGTGTTCGCGAAGATCAACGCATTCTCCAAGCTGGTGTCCATGTTGTTGTGGGCACTCCTGGGCGTGTGTTTGACATGCTACGAAGGCAGTCTCTTCGCCCAGACTGCATAAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAGATCTACGACATATTCCAGCTACTGCCAGGTAAAATTCAGGTTGGGGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGAGATTACGAGGAAGTTTATGAATAAGCCAGTGAGAATCTTGGTAAAGCGCGATGAACTGACCCTTGAGGGTATCAAGCAGTTTTATGTCAATGTTGATAAAGAAGAATGGAAACTGGAGACGTTGTGTGATCTTTATGAGACACTGGCTATCACCCAAAGTGTCATTTTCGTGAACACTCGGCGCAAGGTCGACTGGCTCACCGACAAAATGAGAAGCAATGATCACACGGTCTCAGCTACCCATGGTGACATGGACCAAAACACTCGTGATATTATCATGCGCGAATTCCGGTCTGGCTCTTCTCGAGTTCTTATCACCACTGATCTATTGGCTCGTGGTATAGATGTGCAACAAGTTTCTTTGGTTATAAATTATGATCTTCCCACCCAACCTGAAAACTATCTTCATCGTATTGGGAGAAGCGGCCGATTTGGAAGAAAAGGTGTTGCTATAAATTTTGTGACATTAGATGATTCAAGAATGTTATCTGATATTCAGAAGTTCTATAATGTGACTGTCGAGGAGCTACCATCAAATGTTGCTGATTTGCTTTGA | 1257 | 0.4328 | LLFAVMAGLAPEGTQFDARQYDAKMSELLATDGQEFFTSYDEVYDTFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL | 418 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto1g0437 | 418 | PANTHER | RNA HELICASE | 28 | 418 | - | - | |
Sto1g0437 | 418 | Pfam | DEAD/DEAH box helicase | 70 | 231 | IPR011545 | GO:0003676|GO:0005524 | |
Sto1g0437 | 418 | SMART | helicmild6 | 298 | 379 | IPR001650 | - | |
Sto1g0437 | 418 | CDD | SF2_C_DEAD | 258 | 388 | - | - | |
Sto1g0437 | 418 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 45 | 73 | IPR014014 | GO:0003724 | |
Sto1g0437 | 418 | Gene3D | - | 254 | 418 | IPR027417 | - | |
Sto1g0437 | 418 | SMART | ultradead3 | 64 | 261 | IPR014001 | - | |
Sto1g0437 | 418 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 192 | 200 | IPR000629 | - | |
Sto1g0437 | 418 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 76 | 246 | IPR014001 | - | |
Sto1g0437 | 418 | Pfam | Helicase conserved C-terminal domain | 271 | 379 | IPR001650 | - | |
Sto1g0437 | 418 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 114 | 399 | IPR027417 | - | |
Sto1g0437 | 418 | Gene3D | - | 35 | 253 | IPR027417 | - | |
Sto1g0437 | 418 | PANTHER | EUKARYOTIC INITIATION FACTOR 4A-2 | 28 | 418 | - | - | |
Sto1g0437 | 418 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 257 | 418 | IPR001650 | - | |
Sto1g0437 | 418 | CDD | DEADc_EIF4A | 49 | 247 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto1g0437 | Sto-Chr1 | 3802051 | 3804646 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto1g0437 | 6 | 418 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 88.889 | 0.0 | 768 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto1g0437 | K03257 | - | gmx:100817948 | 809.29 |