Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0437 TTGCTTTTTGCAGTGATGGCAGGTTTGGCTCCAGAAGGAACACAGTTTGATGCTCGTCAATATGATGCTAAGATGAGTGAATTGCTTGCCACTGATGGCCAAGAATTCTTCACCTCATATGATGAAGTCTATGATACTTTTGATGCAATGGGGTTACAAGAAAATCTTTTAAGAGGCATTTATGCTTATGGTTTTGAGAGGCCTTCGGCAATCCAACAAAGGGGAATTGTTCCATTCTGCAAAGGTCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAAACAGCAACATTTTGTTCTGGAATTCTTCAGCAACTTGATTATGGATTGGTTCAATGCCAGGCTTTAGTTTTGGCACCAACAAGGGAACTAGCACAGCAGATTGAGAAAGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAGGTCCATGCTTGTGTAGGTGGCACTAGTGTTCGCGAAGATCAACGCATTCTCCAAGCTGGTGTCCATGTTGTTGTGGGCACTCCTGGGCGTGTGTTTGACATGCTACGAAGGCAGTCTCTTCGCCCAGACTGCATAAAGATGTTTGTTTTGGATGAAGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAGATCTACGACATATTCCAGCTACTGCCAGGTAAAATTCAGGTTGGGGTGTTCTCTGCTACAATGCCACCAGAAGCCCTTGAGATTACGAGGAAGTTTATGAATAAGCCAGTGAGAATCTTGGTAAAGCGCGATGAACTGACCCTTGAGGGTATCAAGCAGTTTTATGTCAATGTTGATAAAGAAGAATGGAAACTGGAGACGTTGTGTGATCTTTATGAGACACTGGCTATCACCCAAAGTGTCATTTTCGTGAACACTCGGCGCAAGGTCGACTGGCTCACCGACAAAATGAGAAGCAATGATCACACGGTCTCAGCTACCCATGGTGACATGGACCAAAACACTCGTGATATTATCATGCGCGAATTCCGGTCTGGCTCTTCTCGAGTTCTTATCACCACTGATCTATTGGCTCGTGGTATAGATGTGCAACAAGTTTCTTTGGTTATAAATTATGATCTTCCCACCCAACCTGAAAACTATCTTCATCGTATTGGGAGAAGCGGCCGATTTGGAAGAAAAGGTGTTGCTATAAATTTTGTGACATTAGATGATTCAAGAATGTTATCTGATATTCAGAAGTTCTATAATGTGACTGTCGAGGAGCTACCATCAAATGTTGCTGATTTGCTTTGA 1257 0.4328 LLFAVMAGLAPEGTQFDARQYDAKMSELLATDGQEFFTSYDEVYDTFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDSRMLSDIQKFYNVTVEELPSNVADLL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0437 418 PANTHER RNA HELICASE 28 418 - -
Sto1g0437 418 Pfam DEAD/DEAH box helicase 70 231 IPR011545 GO:0003676|GO:0005524
Sto1g0437 418 SMART helicmild6 298 379 IPR001650 -
Sto1g0437 418 CDD SF2_C_DEAD 258 388 - -
Sto1g0437 418 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 45 73 IPR014014 GO:0003724
Sto1g0437 418 Gene3D - 254 418 IPR027417 -
Sto1g0437 418 SMART ultradead3 64 261 IPR014001 -
Sto1g0437 418 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 192 200 IPR000629 -
Sto1g0437 418 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 76 246 IPR014001 -
Sto1g0437 418 Pfam Helicase conserved C-terminal domain 271 379 IPR001650 -
Sto1g0437 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 399 IPR027417 -
Sto1g0437 418 Gene3D - 35 253 IPR027417 -
Sto1g0437 418 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 28 418 - -
Sto1g0437 418 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 257 418 IPR001650 -
Sto1g0437 418 CDD DEADc_EIF4A 49 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0437 Sto-Chr1 3802051 3804646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0437 6 418 Eukaryotic Initiation Factors Gene Family AT1G72730 88.889 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0437 K03257 - gmx:100817948 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0145 9 1323319 1324928 Sto1g0437 1 3802051 3804646 CCT