Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0402 ATGGATTCTTCTTTTCTCATGGGTAGTACAATTTCGGAGCCTCGTGATGATATGGAATTTGAATCTCATGAAGCTGCCTATgcattttataaagaatatgcTAAGTCTGTGGGGTTTGGCACTGCCAAGTTGAGCAGTCGTCGGTCTAGGGCATCAAAGGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGTCCTTCTCCAAAAATTGGTTGTAAAGCAAGTATGCATGTAAAAAGAAGACAAGATGGTAAGTGGTATGTCTATAGCTTTGTGAAAGAGCATAATCATGAGCTTTTACCTGCTCAAGCTCATTTTTTCCGCAGTCACAGGAGTACTGATTCGCTCAGTAATGATGTCCGGATGCGAAGGCGGAAGAATTCAATTACAGTTTCTAAATTATTTAGTGCTTATCTAAATGTTGATTGTTTAGAGAACTTTATGAGAAATCAACATGATAAGGGACGGAGGTTGGTTTTAGAAACTGGGCATGCCCAGTTGCTTCTTGAACTCTTTATCCACATGCAGGAAGAAAATCCAAAATTCTTCTATGCTGTTGATATGAATGAAGAGCATCAACTGAGAAATGTGTTCTGGGTTGATGCCAAAGGCATGGAAGATTATACTTACTTTGGTGATGTTGTTTCATTTGACACAACATATTTCACAAGCAAGTATAAAATACCATTGGTACTATTTTTGGGAGTAAACCACCATATCCAACCAACGTTGCTTGGTTGTGCATTGGTTGCTGATGagaccatttatacgtttgcTTGGTTACTGCAAACATGGTTAACAGCAATGGGCGGACGATCTCCACAAGTAATTCTGACTGACCAAAATGAGGCCATCAAAGCAGCTGTTGCTGCAGTTCTTCCTGCCACACGtcattgtttttgtttgtggaatattttggaaaagaTACCAAGACAGCTTGAAGTTTTCAGTGCATGGCATGATAGTTTTATGGAAAAATTTgacaaatgtatatataaatcatgGACAGAGGAACAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAAATTTCATTTGAGAGAAGTTGAATGGTTTCAATCCTTGTATGATGATCGAAGACGTTGGGCACCAACTTTTATGAGAGATATTTCTTTTGTTGGATTATCCACTAGTTCTCGTGCAGAAAGTGTTAATTCTTTGTTTGACAACCATGTCCAAGGTGATACTTCATTGAAGGAATTTATAGAACGGTACAGGGTGATTCTTGAAGAAAGGTATGAAGAAGAAGCCAAAGCAAATTTTGATGCCTGGCATGAAACACCGGAATTGAAGTCTCCCTCCCCTTTCGAGAAACAAATGTCATTCGTTTACAcacatgaaatttttaaaaagttccaAGTTGAGGTTTTGGGTGCAGCTGCTTGCCATcttaagaaagaaaatgatgATATTCCCACAACATATACTGTGAAGGACTTTGAAGATAATCAAAATTATGTGGTAGAGTGGAACAAATCAAACTCAGATATATGTTGTTCATGCCACTCATTTGAATACAAAGGCTATCTCTGtagacatgctattgttgttttaCAAATGTCTGGTGTTTTCAGTATCCCACCCAAGTATGTATTGCAAAGATTGACAAATGCTGCTATGAGCAGGCATCCTATCAGTGAAAAATTGGATGAGGTGCAATCTAAGGTCCGCCGTTTCAATGATTTATGTAGAAGAGCCATAATATTGGGTGAAGAAGGGTCTTTGTCTCAAGAGAGTTACTATATTGCTTTAGGTGCCATAAAAGATGCTTTAAAGCAATGTGCCAACATGAACTCTATTGAGAATGATGTGAGACCTGACATGTTATCTACTCATGTTTGTAATGTTGAAGAAGAGCATCAGTCTAGTAATGCATGTATCAAGAAGCTTCCTGATCCAAGGATGACTAGTGGTAATAAGGCTGCGAGGACTGGTATGGCTGCTAGGGATGTGGGAAGCGCAGACAATAATGAAGGAAGTAAAGGAAAGGTATCTCAACTAGAAGCAGTGAGTGGGCAAGATGGTTTTCACCAAATGGAACTGACTGAAATGAGGCAACATAATGTCATGCCTATGCAGTTTCACAGTATGGTGCCTTCTCTGTTCCATTCGCCGACACAGTTTCATAATGCAGTTTCTACTCATTTGCATGATAATTGCCTTCCTCAGGGTAGGTGGCAGTGGCATCCTGAGATTCCAAAGGCCAAGAAAGGATTAACAGAAGCGAGCATGACCCTATTGATCAAATCCAATTACTTTCACGGCGTCCCAAACGCCATGGCAATGTGCTCGAGCTTCTGTCCTCAGCTTCCTCTCCACTTTAGAGGAAAACCCATTTCATCACTCAATTCTGTTTCTTTTAGGACCTTTTCTTCTCAGATATCCAATGCTTCCGCTCAAGTAAATGAAACACCACGTGTTGGCTTTTTAGGCATCGGAATCATGGGCTCTCCAATGGCACAAAATCTATTAAAAGCTGGATGTGACCTGACAGTTTGGAATAGAACCAAGAGCAAGTGTGATCCTCTAATCAGCTTGGGAGCAAAATATAaatcatctcctgaagaagtaaCTGCATCATGTGATCTCACATTTGCCATGCTTGCTGATCCTCAATGTGCAGTGGATGTTGCTTGTGGAAAATACGGAGCTGCTAGTGGATTGGGTCCAGGAAAAGGATACGTGGATGTTTCAACAGTCGATGGAGCCACCtctaaattgattagtgagcaTATCAAATCTACAGGGGCATTATTTTTGGAGGCTCCGGTTTCAGGTTCCAAAAAGCCTGCAGAAGATGGGCAATTGATATTTCTAACAGCAGGTGACAAAAATCTTTACGAAACAGTGGCTCCTTACTTGGACATCATGGGGAAATCAAGATTCTACTTAGGAGAAGTTGGAAATGGCGCTGCAATGAAACTTGTTGTCAATATGATTATGGGCAGTATGATGGCATCCTTTTCTGAAGGAATACTTCTTGCCGAGAAAGTTGGTTTGGATCCTAAAGTACTAGTGGAGGTAGTTTCACAGGGTGCCATTAGTGCACCAATGTACTCTACCAAGGGCCCTTCCATGATCCAGTCCCTTTACCCAACTGCATTCCCCCTAAAGCATCAGCAAAAGGTCTGTAAAATCTTCTGTTCACTCACTTGGAACAATAGCACTGATTCAGTGTTGCTGGGCCAGCCTGGGCCGGGTGGCCCACCTTGGCCTTAA 3279 0.3888 MDSSFLMGSTISEPRDDMEFESHEAAYAFYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSTDSLSNDVRMRRRKNSITVSKLFSAYLNVDCLENFMRNQHDKGRRLVLETGHAQLLLELFIHMQEENPKFFYAVDMNEEHQLRNVFWVDAKGMEDYTYFGDVVSFDTTYFTSKYKIPLVLFLGVNHHIQPTLLGCALVADETIYTFAWLLQTWLTAMGGRSPQVILTDQNEAIKAAVAAVLPATRHCFCLWNILEKIPRQLEVFSAWHDSFMEKFDKCIYKSWTEEQFEKRWWKLVDKFHLREVEWFQSLYDDRRRWAPTFMRDISFVGLSTSSRAESVNSLFDNHVQGDTSLKEFIERYRVILEERYEEEAKANFDAWHETPELKSPSPFEKQMSFVYTHEIFKKFQVEVLGAAACHLKKENDDIPTTYTVKDFEDNQNYVVEWNKSNSDICCSCHSFEYKGYLCRHAIVVLQMSGVFSIPPKYVLQRLTNAAMSRHPISEKLDEVQSKVRRFNDLCRRAIILGEEGSLSQESYYIALGAIKDALKQCANMNSIENDVRPDMLSTHVCNVEEEHQSSNACIKKLPDPRMTSGNKAARTGMAARDVGSADNNEGSKGKVSQLEAVSGQDGFHQMELTEMRQHNVMPMQFHSMVPSLFHSPTQFHNAVSTHLHDNCLPQGRWQWHPEIPKAKKGLTEASMTLLIKSNYFHGVPNAMAMCSSFCPQLPLHFRGKPISSLNSVSFRTFSSQISNASAQVNETPRVGFLGIGIMGSPMAQNLLKAGCDLTVWNRTKSKCDPLISLGAKYKSSPEEVTASCDLTFAMLADPQCAVDVACGKYGAASGLGPGKGYVDVSTVDGATSKLISEHIKSTGALFLEAPVSGSKKPAEDGQLIFLTAGDKNLYETVAPYLDIMGKSRFYLGEVGNGAAMKLVVNMIMGSMMASFSEGILLAEKVGLDPKVLVEVVSQGAISAPMYSTKGPSMIQSLYPTAFPLKHQQKVCKIFCSLTWNNSTDSVLLGQPGPGGPPWP 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0402 1092 MobiDBLite consensus disorder prediction 648 684 - -
Sto1g0402 1092 Pfam SWIM zinc finger 507 540 IPR007527 GO:0008270
Sto1g0402 1092 Pfam MULE transposase domain 227 320 IPR018289 -
Sto1g0402 1092 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Sto1g0402 1092 Pfam NAD binding domain of 6-phosphogluconate dehydrogenase 826 985 IPR006115 GO:0050661
Sto1g0402 1092 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 2 707 - -
Sto1g0402 1092 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 986 1075 IPR008927 -
Sto1g0402 1092 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 707 IPR031052 GO:0006355
Sto1g0402 1092 Pfam NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 988 1062 IPR029154 GO:0051287
Sto1g0402 1092 Gene3D - 820 987 - -
Sto1g0402 1092 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 826 986 IPR036291 -
Sto1g0402 1092 SMART 26again6 517 544 IPR006564 GO:0008270
Sto1g0402 1092 Gene3D - 988 1082 IPR013328 GO:0016491
Sto1g0402 1092 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0402 Sto-Chr1 3373527 3382500 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sto1g0402 NAD_binding_2 1.2e-36 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0402 - - gmx:100805273 1251.11