Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0397 ATGGAGGAAGAGATGATGAATAGGTCTAATTGTGATGATCAAGCCACTGCTTCAATTCACTTATTGCCTCCTTCAATACTCTTACCAACTCCAACTCAacctgagaagaagaagaaaagcctcCCTGGCAACCCAGACCCAGAAATAGAAGTGATAGCGTTATCCCCAAAGTCACTTCTTTCAGCAAATATGTTCACATGCGAGATCTGCAATAAGGGGTTTCAGAGAGAGCAGAATCTACAGCTTCACAGGAGAGGCCACAATCTGCCATGGAAGCTGAAGCAGAAATCATCAAAAGAAGATCATgaaggtgaagaagaagaagaagggatgGTGAAGGTGATGAAGAGGAAGGTGTACGTTTGCCCAGAAGTGACATGTGTGCACCATAATCCAGCAAGTGCACTGCGAGATTTGGCTGGAATCAAAAAGCACTTTTCCAAAAAGCACGGAGAGAAAAAGTGGAAATGTGATAAGTGCTTTAAGAGGTATTCTGTTCAATCTGATCTTAAGGCTCATTCTAAGACCTGTGGAATTAAAGAGTATACATGTGAATGTGGAACAATCTTCTCAAGGTaa 579 0.3817 MEEEMMNRSNCDDQATASIHLLPPSILLPTPTQPEKKKKSLPGNPDPEIEVIALSPKSLLSANMFTCEICNKGFQREQNLQLHRRGHNLPWKLKQKSSKEDHEGEEEEEGMVKVMKRKVYVCPEVTCVHHNPASALRDLAGIKKHFSKKHGEKKWKCDKCFKRYSVQSDLKAHSKTCGIKEYTCECGTIFSR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0397 192 SUPERFAMILY beta-beta-alpha zinc fingers 64 175 IPR036236 -
Sto1g0397 192 Pfam Zinc-finger double-stranded RNA-binding 65 87 IPR022755 -
Sto1g0397 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 65 87 IPR013087 -
Sto1g0397 192 PANTHER PROTEIN INDETERMINATE-DOMAIN 6, CHLOROPLASTIC 31 192 - -
Sto1g0397 192 SMART c2h2final6 65 87 IPR013087 -
Sto1g0397 192 SMART c2h2final6 120 150 IPR013087 -
Sto1g0397 192 SMART c2h2final6 155 175 IPR013087 -
Sto1g0397 192 MobiDBLite consensus disorder prediction 1 48 - -
Sto1g0397 192 Gene3D Classic Zinc Finger 131 192 - -
Sto1g0397 192 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 31 192 - -
Sto1g0397 192 ProSitePatterns Zinc finger C2H2 type domain signature. 67 87 IPR013087 -
Sto1g0397 192 Gene3D Classic Zinc Finger 46 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0397 Sto-Chr1 3263471 3264759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0397 1 192 IDZ Gene Family AT3G50700 63.021 7.99e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto1g0397 zf-C2H2_jaz 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0397 K25870 - csv:101220200 254.218