Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0362 ATGCAAGACCCGACGGCATTCCAACCTAATATGATGAAACCCCACTTCCCCGAACAAGAACAGCTCAAATGCCCTCGCTGTGACTCCTCCAACACCAAATTCTGCTACTACAACAACTACAACCTCTCGCAGCCGCGCCATTACTGCAAGAATTGCAGAAGGTACTGGACCAAAGGCGGCGCTCTGCGCAACATACCAGTTGGTGGTGGAAGCCGAAAGAACACGAAACGATCATCATCATCGgcaaccaccaccaccgccgccgccacGAAACGCCCTGCTACGCCGTCATCGTCGTCTCCTACTCCGTCATCGGTTTCCTCTGCCTCTGCAACGCACGCCTCAGATCCGGATCATGACCCGACCTGGATGTATTCCAACCCGGGTAGCGATCAGTTTGGTGTTGGTGTTGTTGGTGTTAGTGGTGGGAGTTTTAGCTCCCTTCTGGGATCGGCCGGGCATTGGGGGAGTTTATTGCAGGGTTTGAATCCGAATGGGTCGGATTTGAAAATCGTGCAGCTGGGTTCGGATACGGGTCGAAACCCGGGTTTGGAGAGACAGAAAAACAATGGGAATTCAGAAACCTTCCTGGGTATTCAAAATGGTGATTCAAGCTGTTGGAATAATAAtactggtggtggtggtagtagTAATGGGTGGTCTGATCTTGCAATATACACACCTGCATTTTCTGATGCTATGGAGCAATGGAGTATGAAGTGCCACCCTCCAGAGAGGTGA 741 0.4737 MQDPTAFQPNMMKPHFPEQEQLKCPRCDSSNTKFCYYNNYNLSQPRHYCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSSSATTTTAAATKRPATPSSSSPTPSSVSSASATHASDPDHDPTWMYSNPGSDQFGVGVVGVSGGSFSSLLGSAGHWGSLLQGLNPNGSDLKIVQLGSDTGRNPGLERQKNNGNSETFLGIQNGDSSCWNNNTGGGGSSNGWSDLAIYTPAFSDAMEQWSMKCHPPER 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0362 246 ProSiteProfiles Zinc finger Dof-type profile. 22 76 IPR003851 GO:0003677|GO:0006355
Sto1g0362 246 MobiDBLite consensus disorder prediction 176 197 - -
Sto1g0362 246 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 229 IPR045174 GO:0003700|GO:0006355
Sto1g0362 246 ProSitePatterns Zinc finger Dof-type signature. 24 60 IPR003851 GO:0003677|GO:0006355
Sto1g0362 246 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 10 229 - -
Sto1g0362 246 MobiDBLite consensus disorder prediction 63 127 - -
Sto1g0362 246 MobiDBLite consensus disorder prediction 71 115 - -
Sto1g0362 246 Pfam Dof domain, zinc finger 20 76 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0362 Sto-Chr1 2921247 2922116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0362 1 159 C2C2-Dof Transcription Factor Family AT1G51700 50.000 2.61e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto1g0362 zf-Dof 1.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0362 - - qlo:115988764 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0226 9 2062459 2066745 Sto1g0362 1 2921247 2922116 CCT
Sto1g0362 1 2921247 2922116 Sto1g0362 1 2921247 2922116 ECH