Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0359 ATGGCCACAGTTCCAGGGCAGCCCATATGGGAGATCTTGAAGAAGAATAACTCATTTTTGGTGAAGGAGTTTTGTAATGGCACTCAGAGTGTGCAGTTAAGCAAAGAGGGCAACAAACTATACAACCTCAACACTTTCAAGTTCTcctGTTTGGCGAAGAAGAAAACAGTTACCATTCAGCCTGCCGGTAAAGATCAATCTGTGTTGCTGGCAACAACCCAAACCAAGAAGCGGACCAAGCCTGCTGCTTTGCTTCAGCGATCTGTCATGAAGAAGGAGTTCAGGAGAATGGCAAAGGCTGTTGAGAACCAGGATGAGTTCCTGGTTGGGATTCTTCAATGCAATATACTTGTTACGCTTGGCTTCTGTGATCCGGAAGTTCTTTCATGA 390 0.4487 MATVPGQPIWEILKKNNSFLVKEFCNGTQSVQLSKEGNKLYNLNTFKFSCLAKKKTVTIQPAGKDQSVLLATTQTKKRTKPAALLQRSVMKKEFRRMAKAVENQDEFLVGILQCNILVTLGFCDPEVLS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0359 129 Gene3D - 8 106 - -
Sto1g0359 129 Pfam Ribosomal L28e protein family 9 104 IPR029004 -
Sto1g0359 129 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 104 - -
Sto1g0359 129 PANTHER 60S RIBOSOMAL PROTEIN L28 1 104 IPR002672 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0359 Sto-Chr1 2882197 2883336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0359 1 104 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 61.538 1.96e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0359 K02903 - gmx:100500189 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0231 9 2120676 2122630 Sto1g0359 1 2882197 2883336 CCT
Sto9g0231 9 2120676 2122630 Sto1g0359 1 2882197 2883336 ECH
Sto1g0359 1 2882197 2883336 Sto1g0359 1 2882197 2883336 ECH