Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0349 ATGGCAACTCATGAAACAATAAGAAGAAAAGTATCATTATCTATGGATGGTCTGAGTTGGGATGCCTCACAAGTTGTGGAGAACATGCCCATCTTCTGGAACAACATTATTGAGCAGCAAGAACTTGAAGAAGCAAGCTTTCCTAACCAAATGCAAGATATGCAGCAGAAGCAGCCTCAAACaagtcatcttcatcatcattataATCATCATCTTTATTCAGATTCTGAAGAAGTAATGATCAAAGACAGTATGGTTCAAAAAGAAGCAGAATTATTAGCAGCCACTTCAAAGACAAATCTGTCACAGTATGGACCTTATGGTATGAACATCCAAATTCCTAACTTTCAGACTTCAGATTTCAACATGGCCCACCAAAAGCAACCACTTCTTCTCAATAATGGTACCACCACTTGTTCTGTTGAGTCATTGGATTGCTTGTTTTCTGCTACAAATAGCAACACAGACACTTCAGTGGAAGATGATGGGATCTCCATGATGATCTTATCTGACTGCAGAAGATCATCAAACTTATGGAACTTCagttataacaacaacaatggAGGAAGTGAGTCTGAGAGTACTACTAATGCTTCCAATAATAATGTTGATCATCATGAAACATTATCTCAGAGTTCCTCCAAGTGCACAGCCAAAAGGACCATTGATGAAGCCTTTCATGATCATCAGTATCcaccaaaacccaaaagacCCAGATGGGATTCCAAGCTTCCATCTTCATCAAACATCAACTTCCAGCACCCAaattcattatcatcatcatcttcagtgCTGGAAGAGGCAGACCCAGATGCCATAGCACAAATGAAGGAGATGATATACAGGGCAGCAGCATTTAGGCCTGTGAATTTGGGGATGGAGGTGGTGGAGAAGCCAAAGAGGAAGAATGTGAGGATCTCTTCAGATCCTCAAACTGTGGCTGCAAGGCATAGGAGGGAGAGAATAAGTGAGAGAATTAGGGTTTTGCAGAAACTGGTGCCTGGTGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAGGCTGCAAATTACCTCAAGTTTCTAAGGTCACAAGTTAAAGCATTGGAGAGTCTAGGAACTAAACTTGATGCTATGAATTGTCCTCCTACTAGTATTGCTTTCTCTTTCAAcccttcttttccatttcaagTTAACTCTAATTTTCCTAATGTGATGAAACCCTAG 1206 0.3748 MATHETIRRKVSLSMDGLSWDASQVVENMPIFWNNIIEQQELEEASFPNQMQDMQQKQPQTSHLHHHYNHHLYSDSEEVMIKDSMVQKEAELLAATSKTNLSQYGPYGMNIQIPNFQTSDFNMAHQKQPLLLNNGTTTCSVESLDCLFSATNSNTDTSVEDDGISMMILSDCRRSSNLWNFSYNNNNGGSESESTTNASNNNVDHHETLSQSSSKCTAKRTIDEAFHDHQYPPKPKRPRWDSKLPSSSNINFQHPNSLSSSSSVLEEADPDAIAQMKEMIYRAAAFRPVNLGMEVVEKPKRKNVRISSDPQTVAARHRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGTKLDAMNCPPTSIAFSFNPSFPFQVNSNFPNVMKP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0349 401 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 61 399 IPR045843 GO:0003700|GO:0006355
Sto1g0349 401 PANTHER TRANSCRIPTION FACTOR BHLH87 61 399 - -
Sto1g0349 401 Coils Coil 345 365 - -
Sto1g0349 401 SMART finulus 312 361 IPR011598 GO:0046983
Sto1g0349 401 MobiDBLite consensus disorder prediction 188 219 - -
Sto1g0349 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 355 IPR011598 GO:0046983
Sto1g0349 401 MobiDBLite consensus disorder prediction 220 241 - -
Sto1g0349 401 Gene3D - 311 374 IPR036638 GO:0046983
Sto1g0349 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 372 IPR036638 GO:0046983
Sto1g0349 401 MobiDBLite consensus disorder prediction 242 264 - -
Sto1g0349 401 MobiDBLite consensus disorder prediction 188 264 - -
Sto1g0349 401 Pfam Helix-loop-helix DNA-binding domain 316 355 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0349 Sto-Chr1 2815399 2817105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0349 234 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 68.519 1.35e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto1g0349 HLH 2.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0349 - - vra:106773034 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0239 9 2181485 2198176 Sto1g0349 1 2815399 2817105 CCT
Sto1g0349 1 2815399 2817105 Sto1g0349 1 2815399 2817105 ECH