Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0313 ATGTCGTGGCAAGCCTACGTAGATGATCACCTCATGTGCGATATCGACGGCCACCACCTCTCCGCCGCCTCCATCGTCGGCCACGACGGAAGCGTTTGGGCTCAGAGCTCCAGCTTCCCTCAGTTTAACCCTACGGAAATTAATGCCATCATGAAAGATTTTGATGAGCCTGGCTCACTTGCCCCAACTGGGTTACACCTTGGTGGTACAAAGTACATGGTCATCCAAGGAGAGCCTGGAGCTGTTATCCGTGGCAAGAAGGGTCCTGGTGGGATCACTGTAAAGAAAACAGGTCAAGCTCTGATTTTTGGTATCTATGACGAACCTTTGACCCCAGGACAGTGTAACATGGTGGTTGAGAGGTTGGGAGATTATTTGATTGATCAGAGCATGTAG 396 0.5051 MSWQAYVDDHLMCDIDGHHLSAASIVGHDGSVWAQSSSFPQFNPTEINAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGPGGITVKKTGQALIFGIYDEPLTPGQCNMVVERLGDYLIDQSM 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0313 131 CDD PROF 2 131 IPR005455 GO:0003779
Sto1g0313 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
Sto1g0313 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Sto1g0313 131 SMART prof_2 1 131 IPR005455 GO:0003779
Sto1g0313 131 PANTHER PROFILIN 1 130 - -
Sto1g0313 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Sto1g0313 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779
Sto1g0313 131 Pfam Profilin 1 130 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Sto1g0313 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0313 Sto-Chr1 2449099 2451153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0313 1 131 Cytoskeleton Gene Families AT4G29340 75.373 1.52e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0313 K05759 - cit:102614190 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3179 10 41075402 41079498 Sto1g0313 1 2449099 2451153 ECH
Sto8g2029 8 13127007 13128616 Sto1g0313 1 2449099 2451153 ECH
Sto1g0313 1 2449099 2451153 Sto1g0313 1 2449099 2451153 ECH