Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0309 ATGGATGTGAGGTCAAGAAATGAGGATGAGAGGAAACTTGAGCTTAGGCTTGGCCCTCCTGGGGCTGATGACTGGTCTTCTCTCAATCACAATAATAAAACCAAAATCGCCAATCCCTCTGACgactctcttctctctctttcttactTCCCTCAATCTCCATCTCCAtggccttcttcttcttcttccaattcCAAAACCCCTTCATCTTTTATGGCTCACAATGCAGAAAATACAGCTGTACCCAACACCTCTCAGAAAAGAACTGCTCCTGGTCCAGTAGTGGGATGGCCTCCAATTCGTTCATTTAGGAAGAACCTTGCAAGCAGcagcaacaataacaataataatactaattctAAGACAGCTCATGAGACACAACAGCATCATCAGAATCAGCGTGGTGTTGTTGTTGCAGACAAGGTTGCTGGTAAGAAAGCTGTTGTGGACAACGTTGGTACTAAAGGGTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTAGATCTCAAGGCTTATGATAGCTATCAAAAACTCTCCTCTGCTGTTGATGAACTCTTCAGATGCCTTCTTGCAGCTCAAAGAGATTCCTGTGGTGGAGGAATtcagaagaaggaagaggaagagaaagcaATAACAATTAGTGGTTTATTGGATGGAAGTGGGGAATATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCAGTAA 747 0.3775 MDVRSRNEDERKLELRLGPPGADDWSSLNHNNKTKIANPSDDSLLSLSYFPQSPSPWPSSSSSNSKTPSSFMAHNAENTAVPNTSQKRTAPGPVVGWPPIRSFRKNLASSSNNNNNNTNSKTAHETQQHHQNQRGVVVADKVAGKKAVVDNVGTKGLFVKINMDGVPIGRKVDLKAYDSYQKLSSAVDELFRCLLAAQRDSCGGGIQKKEEEEKAITISGLLDGSGEYTLVYEDNEGDRMLVGDVPWQ 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0309 248 Pfam AUX/IAA family 13 248 IPR033389 -
Sto1g0309 248 MobiDBLite consensus disorder prediction 1 133 - -
Sto1g0309 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 248 IPR003311 GO:0005634|GO:0006355
Sto1g0309 248 SUPERFAMILY CAD & PB1 domains 154 248 - -
Sto1g0309 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 248 - -
Sto1g0309 248 MobiDBLite consensus disorder prediction 1 18 - -
Sto1g0309 248 MobiDBLite consensus disorder prediction 104 133 - -
Sto1g0309 248 Gene3D - 151 248 - -
Sto1g0309 248 MobiDBLite consensus disorder prediction 25 90 - -
Sto1g0309 248 ProSiteProfiles PB1 domain profile. 156 248 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0309 Sto-Chr1 2401780 2403952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0309 160 247 B3 DNA Binding Superfamily AT4G23980 34.091 1.29e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto1g0309 AUX_IAA 1.2e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0309 K14484 - gmx:100804593 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0273 9 2569341 2571562 Sto1g0309 1 2401780 2403952 ECH
Sto1g0309 1 2401780 2403952 Sto1g0309 1 2401780 2403952 ECH