Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0307 ATGGACCTTGTACGGAACACCCATTTCAAGTTGCTTCGGTTTCTTCatctccttcctttctttctgcTTCTTCATCTTCGCCCTCTACTTTCCTTCCAGACACCCATGAGCTGTACGGACACCACTCGACTTTGCACTTCCTTCTTGGCCTTCAAGCCCCAAAAAAACCAGACGCTTGCTATTGTACAGAGCATGTTCGATGTGTTGCCTAGTGACATTACCGTCGAAGGCGATGGCTATGATTACTTGTTCATCAGGAAGAACTGTTCCTGCGCTTCTGGTATAAAGAAATACGTGTCCAACACTACGTTCACAGTGAGATCCAATGAAGGGTTTGTGTATGATTTGGTGATGGATGCCTATGATGGGCTCGCTATCTTGCCCAACACCACCCGGACGGCCAAAAACGGCGCCGTTATATCTCTGAGGTTGTTTTGTGGGTGCTCTAGTGGATTGTGGAACTATTTGGTGAGTTATGTGATGAGAGATGGAGATAGTGTTGAATCTTTGGCGAGTAGGTTTGGGGTCAGTATGGATAGTATTGAGAAGGTGAATGGTATTGATAATCCAGATAATGTCACTGTGGGTTCTCTATATTATATACCAATGGATTCAGCTCCAGGTGAGCCGTATCCCTTGAAGAATGATAGTTCTCCAGCACCTGTTCCTGCTCCATCTGCAGACAATTTTTCAGCTAATCAAGTTGATAATAAGGCTCATGTGCCATTTGGATGGATCATTGGTGGTTTGGGGGTTGGTCTTGCTCTCATAATATTAAGCATTGTTCTCTGTATTTGCCTGAGATCGTCAAATTGTTTTTCCGATGCCAGAGGAAGTCATTCGAAAGATACTGAGGGAAAGATCTTTCATAAATTCCATATTCTTCAGAATTCAAGTTTTTGTTGTGGTTCTGGAAGGTACATCAGTGACAAACCTGTAGACCAGAAGCAAACTGATGGTGAATCCAGCAACCACCAGATTACCATTCCCAAAGTTCCAAGGACTGATGTTTTTGACATGGATAAGCCTGTAGTTTTCACATATGAAGAGATTTTTTCCTCAACTGATTGCTTCTCTGATTCAAATCTACTTGGGCATGGAACATATGGTTCTGTTTACTATGGCCTCCTTCGAGATCAGGAAGTTGCTATTAAAAGAATGACTGCTACAAAAAGTAAAGAATTTTTGTCAGAGATGAAAGTCCTGTGCAAGGTTCATCATGCAAATTTGGTAGAATTGATCGGCTACGCAGCTACTCATGATGAGCTTTTCCTTATTTATGAATATGCACAGAAGGGCTCACTCAAAAGCCATTTGCATGATCCTCAGAATAAGGGTCATTCCTCACTTTCATGGATCATGAGGGTCCAGATTGCACTCGACGCTGCTAGGGGCCTTGAATACATACATGAACACACTAAAACCCATTACATTCATCGAGATATCAAGACAAGCAACATTTTACTTGATGCTTCATTCAGAGCAAAGatTTCGGATTTTGGGTTAGCGAAACTTGTTGAGACAGCAAATGAGGGAGAAATTACTACAACCAAAGTTATTGGTACATATGGTTATCTTGCTCCAGAATATTTGAGTGATGGCCTTGCGACAACCAAAAGTGATGTCTATGCATTTGGTGTTGTTCTCTTTGAGATTATATCTGGGAAGGAGGCCATCATTCGAACAGAAAACACTACGACCAAAAATCCTGAAAGACGTTCTTTGGCCTCTATTATGTTGGCAGCTCTTAGAAACTCGCCTGATTCCATGAGCATGTCAAGCATGAGAGATTATATTGATCCTAATATGATGGATCTGTATCCTCATGATTGTGTATACAAGATGGCGATGCTGGCGAAGCAATGTGTGGACGACGATCACATCTTACGGCCTGATATGAAGCAAGTTGTGATTTCGCTCTCTCAGATTCTCTTGTCTTCTGTTGAGTGGGAAGCAACGCTAGCCGGCAACAGTCAGGTTTTCAGTGGGCTTGTTCAGGGAAGATAG 2007 0.42 MDLVRNTHFKLLRFLHLLPFFLLLHLRPLLSFQTPMSCTDTTRLCTSFLAFKPQKNQTLAIVQSMFDVLPSDITVEGDGYDYLFIRKNCSCASGIKKYVSNTTFTVRSNEGFVYDLVMDAYDGLAILPNTTRTAKNGAVISLRLFCGCSSGLWNYLVSYVMRDGDSVESLASRFGVSMDSIEKVNGIDNPDNVTVGSLYYIPMDSAPGEPYPLKNDSSPAPVPAPSADNFSANQVDNKAHVPFGWIIGGLGVGLALIILSIVLCICLRSSNCFSDARGSHSKDTEGKIFHKFHILQNSSFCCGSGRYISDKPVDQKQTDGESSNHQITIPKVPRTDVFDMDKPVVFTYEEIFSSTDCFSDSNLLGHGTYGSVYYGLLRDQEVAIKRMTATKSKEFLSEMKVLCKVHHANLVELIGYAATHDELFLIYEYAQKGSLKSHLHDPQNKGHSSLSWIMRVQIALDAARGLEYIHEHTKTHYIHRDIKTSNILLDASFRAKISDFGLAKLVETANEGEITTTKVIGTYGYLAPEYLSDGLATTKSDVYAFGVVLFEIISGKEAIIRTENTTTKNPERRSLASIMLAALRNSPDSMSMSSMRDYIDPNMMDLYPHDCVYKMAMLAKQCVDDDHILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0307 668 SUPERFAMILY LysM domain 157 203 IPR036779 -
Sto1g0307 668 Gene3D Phosphorylase Kinase; domain 1 331 429 - -
Sto1g0307 668 ProSiteProfiles Protein kinase domain profile. 358 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto1g0307 668 ProSitePatterns Protein kinases ATP-binding region signature. 364 385 IPR017441 GO:0005524
Sto1g0307 668 SUPERFAMILY Protein kinase-like (PK-like) 340 640 IPR011009 -
Sto1g0307 668 SMART serkin_6 358 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto1g0307 668 Pfam Protein tyrosine and serine/threonine kinase 362 638 IPR001245 GO:0004672|GO:0006468
Sto1g0307 668 SMART LysM_2 158 202 IPR018392 -
Sto1g0307 668 CDD LysM 157 201 IPR018392 -
Sto1g0307 668 Gene3D Transferase(Phosphotransferase) domain 1 431 655 - -
Sto1g0307 668 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 36 668 IPR044812 GO:0019199|GO:0045087
Sto1g0307 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Sto1g0307 668 Gene3D LysM domain 154 209 IPR036779 -
Sto1g0307 668 PANTHER BNAA06G02020D PROTEIN 36 668 - -
Sto1g0307 668 Pfam LysM domain 159 196 IPR018392 -
Sto1g0307 668 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0307 Sto-Chr1 2367898 2374510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0307 35 668 Receptor kinase-like Gene Family AT1G51940 69.003 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Sto1g0307 PK_Tyr_Ser-Thr 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0307 - - gmx:100796989 1055.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0272 9 2543498 2548324 Sto1g0307 1 2367898 2374510 CCT
Sto1g0307 1 2367898 2374510 Sto1g0307 1 2367898 2374510 ECH