Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0298 ATGGCAATGTCCTGCAAGGATGGTAAAGTAGCACTGGACAACGGCAAGTATGTCCGTTATACACCTGAGCAGGTTGAAGCCCTTGAGAGGCTTTACCATGAATGCCCCAAACCCAGTTCCATTCGTCGCCAGCAGCTTATCCGCGAGTGCCCAATTCTCTCTAACATTGAACCGAAGCAGATTAAAGTTTGGTTCCAGAACCGAAGATGTAGAGAGAAGCAAAGAAAAGAGTCTTCGCGCCTTCAAGCAGTTAATAGGAAGCTGACAGCCATGAACAAGCTTCTGATGGAGGAGAACGATAGGTTGCAGAAGCAGGTGTCTCAACTGGTTTACGAAAATGGCTACTTTCGCCAACACACCCAAAATACGACACTTGCAACTAAGGACACAAGCTGTGAATCTGCGGTGACGAGTGGTCAACACAGTTTGACAACCCAGCATCCCCCAAGGGATGCTAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGGACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTCCACTGGCGTGGCAGCACGTGCTTGTGGCCTAGTGGGTCTAGAACCCACAAGGGTTGTAGAAATCCTCAAGGATAGGCCTTCATGGTTTCGTGAATGCCGAGCTGTTGACGTTCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCGCCAACAACATTGGCACCTGCTCGTGACTTCTGGTTGTTGCGCTATACTTCTGTTTTAGAAGATGGCAGTCTTGTGATCTGTGAGAGGTCTCTAAAAAATACTCAAAATGGTCCAAGCATGCCACCTGTGCAGCATTTTGTGAGAGCAGAGATGCTCCCCAGTGGGTACCTGATAAGACCTTGTGAGGGGGGCGGTTCTATCATCCACATTGTTGATCACATGAATTTGGAGCCATGGAGTGTGCCAGAAGTACTGCGGCCATTGTATGAATCATCAACGGTGATGGCTCAAAAGACAACTATGGCGGCTCTACGTCAGCTGAGGCAGATATCCCATGAGGTTTCTCAGTCTAATGTCACTGGGTGGGGCAGACGACCTGCAGCTCTACGAGCACTTAGTCAGAGATTGAGCAGGGGTTTCAATGAGGCACTAAATGGGTTCACTGATGAAGGATGGTCCATGATAGGCAATGATGGTGTAGATGATGTGACGATTCTAGTGAATTCATCCCCTGACAAGCTAATGCGATTAAATCTCTCTTTTAACCATGGATTTCCATCTGTCAGTAATGCAGTCTTGTGTGCAAAAGCCTCAATGCTGTTACAGAATGTGCCTCCAGCCATTCTTCTCAGGTTTTTGCGTGAGCACAGATCAGAATGGGCAGATAACAACATGGATGCTTACTCAGCTGCTGCCATTAAAGTTGGCCCATGCAGCTTACCAGGATCTCGTGTTGGAAATTATGGAGGTCAAGTTATACTTCCTCTTGCCCATACGATTGAGCATGAAGAGTTTCTTGAAGTCATTAAATTGGAAGGAGTTGCTCATTCTCCTGAGGACACTATGATGCCAAGAGAGGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAGAATGCTGTTGGCACCTGTGCCGAACTTATATTTGCTCCTATTGATGCATCCTTAGCTGATGATGCACCCCTTTTACCTTCTGGATTTCGCATCATTCCACTTGATTCTGGGAAGGAAGCTTCCAGCCCAAATCGCACCCTTGACCTTACATCTGCTCTTGATATTGGCCCCACTGGAAATAGAGCATCTAATGATCTTACTGGAAATCCTGGCTGCATGAGATCTGTGATGACAATAGCATTTGAATTTGCATTTGAAAGTCATATGCAAGATCATGTAGCATCCATGGCACGGCAGTATGTTCGCAGCATTATATCATCAGTCCAAAGGGTGGCATTAGCTCTTTCTCCATCTAATTTGAGCTCACATGCTGGGCTTAGGCCACCTCTGGGCACTCCTGAAGCCCAAACACTTGCTCGCTGGATCTGCAACAGTTATAGGTGCTACTTGGGTGTGGAGCTATTAAAATCTGGTAGTGAAGGGAATGAATCCATCCTCAAGGCTTTGTGGCATCACTCAGATGCGTTATTGTGCTGCACTCTAAAGGCTACGCCAGTATTCACTTTCGCCAACCAGGCAGGGCTTGACATGTTGGAGACTACCTTAGTTGCACTACAAGACATAAGTCTGGAGAAAATATTTGATGATCATGGACGAAAGATGCTCTGTTCAGAGTTTCCCCAGATTATACAACAGggtttcacATGCCTCCAAAGTGGTATCTGCCTCTCAAGTATGGGACGACCAGTGTCGTATGAGAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGAAGAGAATGCTCATTGCATCTGCTTTATGTTCATGAACTGGTCTTTCGTTTGA 2514 0.465 MAMSCKDGKVALDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTTLATKDTSCESAVTSGQHSLTTQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGSTGVAARACGLVGLEPTRVVEILKDRPSWFRECRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEPWSVPEVLRPLYESSTVMAQKTTMAALRQLRQISHEVSQSNVTGWGRRPAALRALSQRLSRGFNEALNGFTDEGWSMIGNDGVDDVTILVNSSPDKLMRLNLSFNHGFPSVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCSLPGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGVAHSPEDTMMPREVFLLQLCSGMDENAVGTCAELIFAPIDASLADDAPLLPSGFRIIPLDSGKEASSPNRTLDLTSALDIGPTGNRASNDLTGNPGCMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSNLSSHAGLRPPLGTPEAQTLARWICNSYRCYLGVELLKSGSEGNESILKALWHHSDALLCCTLKATPVFTFANQAGLDMLETTLVALQDISLEKIFDDHGRKMLCSEFPQIIQQGFTCLQSGICLSSMGRPVSYERVVAWKVLNEEENAHCICFMFMNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0298 837 Pfam MEKHLA domain 694 836 IPR013978 -
Sto1g0298 837 SMART START_1 159 369 IPR002913 GO:0008289
Sto1g0298 837 SUPERFAMILY Homeodomain-like 15 77 IPR009057 -
Sto1g0298 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Sto1g0298 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 837 IPR044830 GO:0003700
Sto1g0298 837 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 837 - -
Sto1g0298 837 Coils Coil 81 112 - -
Sto1g0298 837 CDD START_ArGLABRA2_like 154 369 - -
Sto1g0298 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Sto1g0298 837 Gene3D - 11 82 - -
Sto1g0298 837 MobiDBLite consensus disorder prediction 132 149 - -
Sto1g0298 837 SUPERFAMILY Bet v1-like 159 367 - -
Sto1g0298 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Sto1g0298 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Sto1g0298 837 MobiDBLite consensus disorder prediction 132 152 - -
Sto1g0298 837 CDD bZIP 68 107 - -
Sto1g0298 837 Pfam START domain 160 368 IPR002913 GO:0008289
Sto1g0298 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Sto1g0298 837 Gene3D - 194 376 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0298 Sto-Chr1 2258422 2265443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0298 1 789 Homeobox Transcription Factor Family AT1G52150 85.480 0.0 1404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto1g0298 START 6.6e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0298 K09338 - zju:107428556 1578.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0287 9 2704257 2711255 Sto1g0298 1 2258422 2265443 CCT
Sto1g0298 1 2258422 2265443 Sto1g0298 1 2258422 2265443 ECH