Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0296 ATGGAAGTGCCGGAGTATTTTGTCGGTGGCTATTTTGGCGCCGGAGGAGACCACTATTCGCCGGAGAAGCGCCATGCCGACCAGAAGCCAGGCGAGCCATTCGCCATTGATGACCTGCTTGACTTCTCCAACGCCGACGCCATCATGTCCGATGGTTTCTTTGATAGTAATGTCGCCGCCGGTAACTCCACCGACTCCTCCACTGGCACCGCCGTTGAGAGCTGCAACTCCTCAATTTCCGGCAACTTCGGCGGCGCTCGGCCTTTCGGCGATCCTCAATTCTCCGGTGATCTCTGCGTTCCGTGCGATGATATGGCGGAACTGGAATGGCTATCGAACTTCGTGGAGGACTCATCATTCTCAGCGCAAGACGAGTTGAAGACACTCCACCTTCTCTCCGGCGCGACCACCGCTTCCGCATTTGGCGCGAAACCGCAGACTCCAGAATCATCCTCCTCATCCGAAACTCTTCCGCCTTTTCCTACCGACGCCACGCGGAACGCACCGTTTTTTCCTCCGGAAACTCCGCTCCCAGGCAAAGCACGAAGCAAGCGTTCACGCGCGGCTCCTGGCGATTGGTCCACGCGCCTCCTTCACCTCGCAACGCCAACCGCGACAACGGCAGCGGAAGCGAAACAGTTGCAATCCAAGTCGTCGTCGGCGGCGAAGAAGCGTGAGAGTTCGAATTCGGACTCCTCCGGGCGGAAATGCCTGCACTGCGCGGCGGAGAAGACGCCGCAATGGCGGACGGGGCCAATGGGACCGAAGACGCTGTGCAACGCCTGTGGCGTGCGGTTCAAGTCCGGGAGGCTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCGACGTTTGTGTCGACGAAGCACTCGAATTCTCATAGGAAGGTTTTGGAGCTGAGGAGGCAGAAGGAGGTGCAAAggcatcaccatcaccatcagcCGCAACACCAACATCAGCATTTGATTAGTCAAACTTCAATTTTCGGCGTATCCAACGGTGGAGATGAGTTCTTGATCCACCACCATGGTGGGCCCGACTATAGGCATATAATCTAG 1053 0.5698 MEVPEYFVGGYFGAGGDHYSPEKRHADQKPGEPFAIDDLLDFSNADAIMSDGFFDSNVAAGNSTDSSTGTAVESCNSSISGNFGGARPFGDPQFSGDLCVPCDDMAELEWLSNFVEDSSFSAQDELKTLHLLSGATTASAFGAKPQTPESSSSSETLPPFPTDATRNAPFFPPETPLPGKARSKRSRAAPGDWSTRLLHLATPTATTAAEAKQLQSKSSSAAKKRESSNSDSSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKEVQRHHHHHQPQHQHQHLISQTSIFGVSNGGDEFLIHHHGGPDYRHII 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0296 350 Pfam GATA zinc finger 237 270 IPR000679 GO:0006355|GO:0043565
Sto1g0296 350 ProSiteProfiles GATA-type zinc finger domain profile. 231 267 IPR000679 GO:0006355|GO:0043565
Sto1g0296 350 PANTHER GATA TRANSCRIPTION FACTOR 1 350 - -
Sto1g0296 350 MobiDBLite consensus disorder prediction 140 161 - -
Sto1g0296 350 PIRSF Txn_fac_GATA_plant 17 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sto1g0296 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 294 - -
Sto1g0296 350 CDD ZnF_GATA 236 283 IPR000679 GO:0006355|GO:0043565
Sto1g0296 350 PANTHER GATA TRANSCRIPTION FACTOR 9 1 350 - -
Sto1g0296 350 MobiDBLite consensus disorder prediction 140 236 - -
Sto1g0296 350 MobiDBLite consensus disorder prediction 199 227 - -
Sto1g0296 350 SMART GATA_3 231 281 IPR000679 GO:0006355|GO:0043565
Sto1g0296 350 ProSitePatterns GATA-type zinc finger domain. 237 262 IPR000679 GO:0006355|GO:0043565
Sto1g0296 350 Gene3D - 231 281 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0296 Sto-Chr1 2245598 2246816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0296 32 350 C2C2-Gata Transcription Factor Family AT4G32890 46.273 5.62e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto1g0296 GATA 2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0296 - - gmx:100776605 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0296 1 2245598 2246816 Sto1g0296 1 2245598 2246816 ECH