Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0288 ATGCGGAATTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCCCGCAAGAAATCTCGAATCTGGCTCGGAACCTTCGCGACCCCTCAAATGGCGGCTCGAGCCCACGACGTGGCCGCTCTCACCATCAAAGGCGACTCTGCTCTGCTCAATTTCCCCCACTTGGCTCCCTTGCTTCCCACCCCCGCCACGCTCGCGCCGCGCGACATCCAAGCCGCCGCCTCCGAGGCCGCCGCCATGGTCCAATTCGACCACCACCCggtgccgccgccgccgccagcGGCGGCGGAAGAGTCGCCGGAGAGTTCGAGTTCGGAGCTGAGCGAGATTGTGGAACTGCCTAATATTGACGGAGAGGAGTTTCAGTCGGTGGATTCGACGACGACGTCGTCGAGGGGTGAATTCGAACAATTTGTGTGGGTGGAATCTATGGATTGTTGGAAAGGAGCTGAAAACGTGTGGTTCATGGCAATAAGAACTCATTGGCTCATTGCAACTACATTATTGCTTcccattaaataa 519 0.5376 MRNWGKWVSEIREPRKKSRIWLGTFATPQMAARAHDVAALTIKGDSALLNFPHLAPLLPTPATLAPRDIQAAASEAAAMVQFDHHPVPPPPPAAAEESPESSSSELSEIVELPNIDGEEFQSVDSTTTSSRGEFEQFVWVESMDCWKGAENVWFMAIRTHWLIATTLLLPIK 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0288 172 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Sto1g0288 172 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Sto1g0288 172 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Sto1g0288 172 MobiDBLite consensus disorder prediction 81 107 - -
Sto1g0288 172 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 128 - -
Sto1g0288 172 Pfam AP2 domain 3 44 IPR001471 GO:0003700|GO:0006355
Sto1g0288 172 SUPERFAMILY DNA-binding domain 2 53 IPR016177 GO:0003677
Sto1g0288 172 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Sto1g0288 172 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0288 Sto-Chr1 2201521 2202954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0288 1 146 AP2-EREBP Transcription Factor Family AT3G16280 51.634 8.47e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto1g0288 AP2 5.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0288 K09286 - gmx:100801780 153.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0288 1 2201521 2202954 Sto1g0288 1 2201521 2202954 ECH