Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0278 ATGATGGGTGGGAACCCCAATAATAACTGGTGGAATatgaatcatcatcatcattcatatgTGCTTGGATCTTCAATTCCTTTCAATTCTCTCACAGAAAATCCTCCTCCTCCAACAACTAATCCTTCTTCATGGAGCCAACTGCTTTTCTCTGGAGTACCAGGGGAGGAAGAGAGATTGGGTTTTGATCATTTTCAAGCTAATAAGAAGTTGGGAAGCTGGGATGAACAAATTCTGAATGATCATGATCATGAAGAACATGATGTTGTTGATATTGGAATAATAAAGCAAGAGGTCTCTTCCCAAAGTGGAAACTTGTATGGGCATCATGGGGGTAATAGTACTACAGAGGAGTTTCTTCAGGctacttcatcttcttcatcaggTTCAGCTAATTGGTCTCACATGGTGGCTATGGCTGTTTCTTCTTCCCCTAGCTCTTGTGTCACTACCttgagtaataataataatactaataacaTATTGGATTTCACTTATAACAAGccagatcatcatcatcataggaAAATTAATAATCAACCACCTGCAGATCATACATCTTctgagTGTAATAGCACTTCTAATGGTGGAGTTTGTAAGAAGGCTAGGGTTCATTCCTCTTCAAGCCAACCTCTTCTCAAGGTTAGAAAAGAGAAGCTTGGTGATAGAATAACTGCTCTTCACCAGCTAGTTTCTCCATTTGggaagACTGACACAGCATCTGTGTTGTTAGAAGCCATTGGATATATCAGATTCCTTCAGGCTCAAATTCAGGCACTCAGTTCTCCATATTTGGGTAATTCTTCAAGAAACAGGAGGAATCATCAGTCTGTAactgtaaAAGAGGAAAAAAAGGTTATACAAGttattattgattatatatatatatatataaatatatttatgatgataaaaataaataatattcagGATGTAGCAGAAGAAAAGGCAAAGGATTTGAGAAGTAGAGGACTATGTTTGGTGCCTATGTCTTTCACCCAACATGTTGGAAGTGAAAATGGAGCTGATTATTGGTCTTCAGCTTATGCCACTGGATTTTAA 1062 0.3343 MMGGNPNNNWWNMNHHHHSYVLGSSIPFNSLTENPPPPTTNPSSWSQLLFSGVPGEEERLGFDHFQANKKLGSWDEQILNDHDHEEHDVVDIGIIKQEVSSQSGNLYGHHGGNSTTEEFLQATSSSSSGSANWSHMVAMAVSSSPSSCVTTLSNNNNTNNILDFTYNKPDHHHHRKINNQPPADHTSSECNSTSNGGVCKKARVHSSSSQPLLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQAQIQALSSPYLGNSSRNRRNHQSVTVKEEKKVIQVIIDYIYIYINIFMMIKINNIQDVAEEKAKDLRSRGLCLVPMSFTQHVGSENGADYWSSAYATGF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0278 353 CDD bHLH_AtbHLH_like 214 261 IPR045239 -
Sto1g0278 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 266 IPR036638 GO:0046983
Sto1g0278 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 253 IPR011598 GO:0046983
Sto1g0278 353 PANTHER OS05G0228400 PROTEIN 40 340 - -
Sto1g0278 353 Gene3D - 207 283 IPR036638 GO:0046983
Sto1g0278 353 MobiDBLite consensus disorder prediction 170 205 - -
Sto1g0278 353 MobiDBLite consensus disorder prediction 181 205 - -
Sto1g0278 353 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0278 Sto-Chr1 2095528 2099878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0278 200 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 54.545 1.51e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0278 - - aip:107617848 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0278 1 2095528 2099878 Sto1g0278 1 2095528 2099878 ECH