Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0267 ATGGGCGTGGACATGTCGAATGATCCACCTCCCACTTCTCACACGAAGGACTTCTTCGCTTCCCCTGCTCTTTCTCTCAGCCTCGTCAGGATATTTAGGcatgcggcggcggcggcgacgTCGAGCAAGGAGGGGGAGGAGACGGTGGAGATAATAAGTAGTGAGGGGCACACCGCCGACCAAATCCGAGAAATGGAAGCACTTTTCAAAGAGTCGCCACATCCTGATGAAAAGCAGAGGCAACAACTTAGCAAGCAATTAGGGCTGGCTCCTAGGCAAGTCAAGTTCTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATTCAAGAGCGACACGAGAATTCGTTGCTGAAATCAGAAATAGAGAAACTAAGAGAGGAAAACAAAAGCATGAGAGACACCATTAACAAAGCTTGCTGTCCCAACTGTGGCATGCCCACCACTTCCAGAGATCCCACCGAAGAACAACAACTTCGTATCGAAAATGCCAAACTCAAATCCGAGgtagagAAGCTACGGGTGGCGTTAGGGAAATACCCAGGAGGCGGAACGACGTCGTGTTCTCCATCGTGCTCGGGATCAGGGAATaccaacaataacaacaacaacaacgagCAAGACGAGAACAGAAGCTCGTTGGATTTCTACACCGGAATATTCGGTCTCGACAAGTCCAGGATCATGGAGATACTGAATCAAGCACTGCACGAACTCCTCAAAATGGGCACCGCAGGGGAGCCTCTCTGGATTCGCAGCGTCGAGACTGGTCGAGATATTCTCAACTACGACGAGTACGTCAAGGAGTTCGGTGTTAATGACAATAATGCCCATGACTCTAAGAGATCCATCGAGGCTTCTAGAGACACCGGGGTTGTTTTCGTCGATCTTCCGCGTCTTATTCACAAATTTTTAGATGTGAATCAATGGAAGGAAATGTTTCCGTGTTTAATATCAAAGGCGGCGACAGTAGATGTTATATGCAATGGAGAAGGTGCCAACAGGGATGGTGCGGTGCAACTGGTGAGAAATTCATAA 1035 0.458 MGVDMSNDPPPTSHTKDFFASPALSLSLVRIFRHAAAAATSSKEGEETVEIISSEGHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLREENKSMRDTINKACCPNCGMPTTSRDPTEEQQLRIENAKLKSEVEKLRVALGKYPGGGTTSCSPSCSGSGNTNNNNNNNEQDENRSSLDFYTGIFGLDKSRIMEILNQALHELLKMGTAGEPLWIRSVETGRDILNYDEYVKEFGVNDNNAHDSKRSIEASRDTGVVFVDLPRLIHKFLDVNQWKEMFPCLISKAATVDVICNGEGANRDGAVQLVRNS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0267 344 CDD homeodomain 58 106 IPR001356 GO:0003677
Sto1g0267 344 Gene3D - 52 121 - -
Sto1g0267 344 SUPERFAMILY Homeodomain-like 57 109 IPR009057 -
Sto1g0267 344 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Sto1g0267 344 Coils Coil 155 175 - -
Sto1g0267 344 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 54 341 - -
Sto1g0267 344 Pfam Homeodomain 58 106 IPR001356 GO:0003677
Sto1g0267 344 MobiDBLite consensus disorder prediction 183 209 - -
Sto1g0267 344 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 54 341 IPR042160 -
Sto1g0267 344 Coils Coil 107 134 - -
Sto1g0267 344 ProSiteProfiles 'Homeobox' domain profile. 58 108 IPR001356 GO:0003677
Sto1g0267 344 SMART HOX_1 51 112 IPR001356 GO:0003677
Sto1g0267 344 Pfam START domain 230 340 IPR002913 GO:0008289
Sto1g0267 344 ProSiteProfiles START domain profile. 220 344 IPR002913 GO:0008289
Sto1g0267 344 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Sto1g0267 344 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Sto1g0267 344 SUPERFAMILY Bet v1-like 222 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0267 Sto-Chr1 1994250 1998818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0267 57 341 Homeobox Transcription Factor Family AT1G79840 61.806 3.67e-118 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto1g0267 START 5.8e-11 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0267 K09338 - gmx:100808292 479.559