LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto1g0255	ATGTCTGCGCCGTCTCCGGATGTATCTCAGACAGCTCCCGATACCAACGTcacctctcctcctcctccgccgCCTGCCACCACCAATGATATCTCTTCTCCGCCGCCGACCTCCTCTGCCGTTCCCAGTAATTCCACTCCACCTTCCGGGACTCTGGCGTCGCCGCCTCCGCCGCCACCACCGTCCGGTGGAATGTCGCAGGGCACTGTAATCGGACTAGTTGTTGGGACTGTGTTTGGTTCGCTGCTTATGCTGCTTTTTGTGGGCGTTTGTGCCTTTTTGTATAGAAGGAGGAAGCGGAGAAGGATGAGACAACATGGGTTTGATAATTACTCTACTGCTACTCCACAACCGCCGAAAGCTGATCAGTTTGGTGGTCTACCCCAGCATTGGCAACAAACTACTCTTCCTCCTACAGATGGTGGTGCTACATTGCTTCCAAAGCCAACCCCACCCCCTGGAGTTGGATTGAATCAGCAACAGTCGGCCATTAACGTTCCGTCTCCCCCTATGCATTCTATGACTAGCACAAGTTTGGAATCTGAGAGACCAGATAATGCATCATCTCCTGCCATTGCCTTGGGACTCTTACAAATCTCATTTACATATGATGAGTTAGCATTTGCAACAAATGGATTCTCAAACTCAAATCTTCTTGGTCAAGGTGGTTTTGGCTATGTCCATAAAGGAGTCCTCCCAAATGGAAAAACAGTTGCAATTAAGCAGATGAAATCTGGGAGCAGACAGGGGGAGCGTGAGTTTCAGGCTGAAGTTGAGATCATTAGCCGAGTACATCACAGACATCTTGTTTCCCTAGTTGGATACTGCATTGCTGGAGACCAGAGGttgcttgtttatgagtttGTCCCAAATAATACACTAGAGTTCCATTTGCATGGAAAAGACAGAGAAATTATGGACTGGGCTACAAGGATGAAAATTGCTATTGGATCTGCAAAAGGATTGGCATATCTGCATGAGGACTGTCAACCCAAAATCATACACCGTGACATCAAGGCATCCAATATTCTCCTTGATGATAAATTTGAGGCAAAGGTTGCAGATTTTGGACTTGCCAAATTTTCATCAGACACTGATACCCATGTCTCAACTCGAGTAATGGGAACCTTTGgATACTTGGCTCCAGAATATGCAGCTAGTGGGAAACTCACTGAAAAGTCAGATGTCTTCTCTTTTGGTGTTGTGCTTTTGGAGTTGATTACAGGACGGAAACCTGTTGATAAAGCTGAGTCTTTCACAGATGACAGTATGGTTGAGTGGGCAAGGCCTTTGCTCTCCCAAGCTCTGGAAAAGGGCAACTTCGATGTTCTTGCAGATCCAAGGCTACAGAAGAGTTACAACTCTGATGAGATGGTTCGAATGATTGTTTGTGCTGCAAATTGCGTGCGCCATTCAGCCAGGCGTCGACCTCGAATGAGCCAGGTAGTTCGAGCACTAGAAGGCAATATTTCTCTGGATGATCTGAATGAAGGGAACACACCTGGGCACAGCAGAGCATTCAGTTCCTTTGAGAGTACAAATTATGATACTAACCAATACAATGAGGACCTAAAGAAGTTCAGGAAGCTGGCACTAGATCAAGGAACGAGTGAATACAGTGGGCCCAGTAGTGAGTATGGTCAACATCAGTCTGCCTCCAGCAGTTCAGGCCAGCAAAACACACAAGAGAACTAA	1695	0.4572	MSAPSPDVSQTAPDTNVTSPPPPPPATTNDISSPPPTSSAVPSNSTPPSGTLASPPPPPPPSGGMSQGTVIGLVVGTVFGSLLMLLFVGVCAFLYRRRKRRRMRQHGFDNYSTATPQPPKADQFGGLPQHWQQTTLPPTDGGATLLPKPTPPPGVGLNQQQSAINVPSPPMHSMTSTSLESERPDNASSPAIALGLLQISFTYDELAFATNGFSNSNLLGQGGFGYVHKGVLPNGKTVAIKQMKSGSRQGEREFQAEVEIISRVHHRHLVSLVGYCIAGDQRLLVYEFVPNNTLEFHLHGKDREIMDWATRMKIAIGSAKGLAYLHEDCQPKIIHRDIKASNILLDDKFEAKVADFGLAKFSSDTDTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSFGVVLLELITGRKPVDKAESFTDDSMVEWARPLLSQALEKGNFDVLADPRLQKSYNSDEMVRMIVCAANCVRHSARRRPRMSQVVRALEGNISLDDLNEGNTPGHSRAFSSFESTNYDTNQYNEDLKKFRKLALDQGTSEYSGPSSEYGQHQSASSSSGQQNTQEN	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto1g0255	564	MobiDBLite	consensus disorder prediction	536	564	-	-
	Sto1g0255	564	ProSitePatterns	Protein kinases ATP-binding region signature.	219	241	IPR017441	GO:0005524
	Sto1g0255	564	Pfam	Protein tyrosine and serine/threonine kinase	216	486	IPR001245	GO:0004672\|GO:0006468
	Sto1g0255	564	SMART	serkin_6	213	449	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto1g0255	564	MobiDBLite	consensus disorder prediction	1	15	-	-
	Sto1g0255	564	ProSiteProfiles	Protein kinase domain profile.	213	492	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto1g0255	564	MobiDBLite	consensus disorder prediction	533	564	-	-
	Sto1g0255	564	MobiDBLite	consensus disorder prediction	16	31	-	-
	Sto1g0255	564	PANTHER	SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED	4	557	-	-
	Sto1g0255	564	SUPERFAMILY	Protein kinase-like (PK-like)	195	486	IPR011009	-
	Sto1g0255	564	Gene3D	Phosphorylase Kinase; domain 1	174	288	-	-
	Sto1g0255	564	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	333	345	IPR008271	GO:0004672\|GO:0006468
	Sto1g0255	564	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	4	557	-	-
	Sto1g0255	564	Gene3D	Transferase(Phosphotransferase) domain 1	289	499	-	-
	Sto1g0255	564	MobiDBLite	consensus disorder prediction	106	187	-	-
	Sto1g0255	564	MobiDBLite	consensus disorder prediction	32	48	-	-
	Sto1g0255	564	MobiDBLite	consensus disorder prediction	155	185	-	-
	Sto1g0255	564	MobiDBLite	consensus disorder prediction	49	64	-	-
	Sto1g0255	564	MobiDBLite	consensus disorder prediction	1	64	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto1g0255	Sto-Chr1	1919197	1923812	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto1g0255	37	557	Trihelix Transcription Factor Family	AT1G70460	51.769	1.07e-168	494

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Sto1g0255		PK_Tyr_Ser-Thr	2.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto1g0255	-		-	aip:107617256	721.465