Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0228 ATGGATGACCCTGAGAATGATGCAAAGTATACTCCCAACCCGTATGGTGTAAGTCATCACCAAGGTTATGGTTATTTGAATCGTCAGAAACTTCCAGCTGGGAGTTCTCAGCATTCACAGCCTGTTACAAGTGAATATGTTGACAATGGTGATGATAATAAGCAGAAGAGTTACACCATAAGCATTCAAGATGATTTAGAATGGCACCCAAAAAAGCGAAAGCTTAAAAGTTTGATTTCAACTTATGAATTTGCACCTCGTGTACCTGCACCACCAGTTGCAGGTCCTGCTGCCCCTAAACCATCATTTGGTGGTAGAAATTCCCTTACTGACTGGACTGAGCATGAGACAATTGTGCTTCTTGATGCTTGGGGTGACCGGTTTATTCAACGTGGAAGGAAGAGTCTTCGATCTGAGGAATGGCAAGAAGTTGCAGAAAGGGTAAAAGAAGTTTCAAAAATTGAAAGGACAGATACTCAGTGTAGGAATCGTCTAGATACATTgaagaaaaaatacaaaaaggaGAAGACTAAGTTGGCAGAGGTGGGTGGTGGAACTAGCAAATGGGTTTATTTTAATAGGATGGATAAGCTGATGTCTTCTCCACCACAACAAGCAGGTCTATCTTGTGGTTTGGACTCAGGAGAGTATGTTTTCATGAACCCCCGAGTTTATTTGAACCGGGCAAATGGTTTAGATGAAATGAGGGATAGTCCTGGAAATTCAGAGTCAACTGGTGAAGAAGGCTCAGATGGACTTCaaccaaagaaaagaaagtcTAGAGGAAGCAACAATGAAACTTCTTTTAAATTGCTTGCTGATTCCATTCACAAATTTAGTGAGATATATGAGAAGATCGAAAATAATAAAAGGCAGCAGATGGTGGAACTGGAGAAGATGAGGATGGATTTCCATAAGGAATTGGAAATGCAGAAGAGGCAGATTTTTGAGAAAGTCCAGAGCGAGATTGCGAAACTGCAGCAGAGAGATGAGGAGGAGAATGACGAGTCTGCTGAGAATGGTATGTAA 1029 0.4014 MDDPENDAKYTPNPYGVSHHQGYGYLNRQKLPAGSSQHSQPVTSEYVDNGDDNKQKSYTISIQDDLEWHPKKRKLKSLISTYEFAPRVPAPPVAGPAAPKPSFGGRNSLTDWTEHETIVLLDAWGDRFIQRGRKSLRSEEWQEVAERVKEVSKIERTDTQCRNRLDTLKKKYKKEKTKLAEVGGGTSKWVYFNRMDKLMSSPPQQAGLSCGLDSGEYVFMNPRVYLNRANGLDEMRDSPGNSESTGEEGSDGLQPKKRKSRGSNNETSFKLLADSIHKFSEIYEKIENNKRQQMVELEKMRMDFHKELEMQKRQIFEKVQSEIAKLQQRDEEENDESAENGM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0228 342 MobiDBLite consensus disorder prediction 30 62 - -
Sto1g0228 342 Pfam Myb/SANT-like DNA-binding domain 111 198 IPR044822 -
Sto1g0228 342 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 52 341 IPR044823 -
Sto1g0228 342 MobiDBLite consensus disorder prediction 232 266 - -
Sto1g0228 342 MobiDBLite consensus disorder prediction 1 63 - -
Sto1g0228 342 MobiDBLite consensus disorder prediction 250 264 - -
Sto1g0228 342 Coils Coil 283 314 - -
Sto1g0228 342 Gene3D - 112 174 - -
Sto1g0228 342 ProSiteProfiles Myb-like domain profile. 112 169 IPR001005 -
Sto1g0228 342 PANTHER OS01G0718900 PROTEIN 52 341 - -
Sto1g0228 342 Coils Coil 316 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0228 Sto-Chr1 1727508 1728731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0228 112 339 Trihelix Transcription Factor Family AT1G54060 33.088 4.28e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Sto1g0228 Myb_DNA-bind_4 1.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0228 - - tcc:18595893 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0228 1 1727508 1728731 Sto1g0228 1 1727508 1728731 ECH