Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0213 ATGGATGTTACCTCTCTGGCATCAAATAGGAACGCCCAAACCGACCAATATCCTTTGCTGATGGAGCAGCCAGAAACCCACAATGGCCATCAGCACATAATTGACATTACAAGAAATAGTAATGACTTATCCAGCTCATCTCAAGATGATCAACACCATGAAATGCATTTGCCACATAATGAAGATCAACCATCAGTCGGCACGGAAGTACCCACTCATCCAACATCCTCATCTTCCTCTTCCAGATTAAACTCCAGAAATTCCTCATCAACAAGAAGAGGTGAGGGATATGGTCATCGCAGAAGAAGCCCACTGAATTCTGGACTATGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATTGTTGTCTTGTCATTATCCAGGAATGAAAATCCCCAAGCCCCATTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCTACACTTCCTATTCTTTACTTCCGTTATCGAAACCGTAATCACAGTACTGGACAAGACTTATCTCAACCCTCACAAGGATCTTCTGGAAGAAATCCTTCAGAATCGACTCCTTATACTGCCATATCTGTTGCTCATATTTCAGACGAAGAGAATAGTCGTGCTACAGAATCAGCTACAAGAAGCACCGGAATTCCTGGAGCCTTTACTTCTAGGTTCAATGGAGTAGTAGATCATTTTAAGATGGCCTTAGATTGCTTCTTTGCAGTTTGGTTTGTTGTCGGTAACGTTTGGATCTTTGGAGGTCACTCTTCTCCTTCTGATGCTCCAAAATTATATAGGTTATGTATAGTGTTTCTTACCTTCAGTTGCATTGGATATGCTATGCCATTTATACTATGCGCAACAATTTGTTGTTGCTTACCTTGCATTATTTCTGTTTTGGGAATTCGCGAGGACTTTTCTCAAACTAGAGGAGCGACTGTAGAATGTATTAATGCTTTACCAATATACAAGTTCAAATTGAAGAAAAGTGAAAATAGTGAACTGGATGTCAATACAGCTGTAGAGGAAGGAGGGACACTAGCTCTTGGGACAGAAAAGGAGCGATCCATATCAGTAGAAGATGCTGTTTGTTGCATTTGCTTGGCAAAATATGCAGATGATGATGAGCTTAGGGAGCTACCTTGCTTCCATGTCTTCCATGTGGAGTGTGTTGACAAATGGTTGAAGATAAATGCATCTTGCCCTCTCTGTAAAAGTGAGGTTGGTACAAGTGGAGTGCCGTCTTCAGCCGAAGAATCTGGTCAGCATTAG 1275 0.4157 MDVTSLASNRNAQTDQYPLLMEQPETHNGHQHIIDITRNSNDLSSSSQDDQHHEMHLPHNEDQPSVGTEVPTHPTSSSSSSRLNSRNSSSTRRGEGYGHRRRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYFRYRNRNHSTGQDLSQPSQGSSGRNPSESTPYTAISVAHISDEENSRATESATRSTGIPGAFTSRFNGVVDHFKMALDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQTRGATVECINALPIYKFKLKKSENSELDVNTAVEEGGTLALGTEKERSISVEDAVCCICLAKYADDDELRELPCFHVFHVECVDKWLKINASCPLCKSEVGTSGVPSSAEESGQH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0213 424 MobiDBLite consensus disorder prediction 40 103 - -
Sto1g0213 424 CDD RING-H2_RNF111_like 364 406 - -
Sto1g0213 424 SUPERFAMILY RING/U-box 358 411 - -
Sto1g0213 424 SMART ringv_2 364 406 IPR011016 GO:0008270
Sto1g0213 424 Pfam Ring finger domain 365 406 IPR001841 -
Sto1g0213 424 PANTHER PROTEIN, PUTATIVE-RELATED 1 414 - -
Sto1g0213 424 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Sto1g0213 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 414 - -
Sto1g0213 424 SMART ring_2 365 405 IPR001841 -
Sto1g0213 424 MobiDBLite consensus disorder prediction 169 190 - -
Sto1g0213 424 MobiDBLite consensus disorder prediction 65 92 - -
Sto1g0213 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 412 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0213 Sto-Chr1 1587693 1590591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0213 1 417 C3H Transcription Factor Family AT1G80400 59.338 4.01e-176 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0213 - - gmx:100819516 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0213 1 1587693 1590591 Sto1g0213 1 1587693 1590591 ECH