Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0212 ATGACTCTTGGACTTGAGATCACTGAGCTCAGGCTAGGTCTTCCCGGAGGCGGCCGGGAGCCGAgtaagaagaacaagaagagggtGTTCTCGGAGATTATTGTTGATGCCGGCGGTGGGGAGGATGAGAATAGTTGCTCGGGCGAGGCGAAAAGCCCGGCGAGTAAGAATAATGATCAAGTTGTGGGGTGGCCTCCGGTGTGCTCATATAGGAGGAGGAATAGTATGAGTGATAATGAAGCATCAAAAATGTACGTGAAGGTAAGTATGGATGGAGCTCCTTTCTTGCGTAAGGTTGATTTGGCTATGCAAAAAGGATACTCTCAATTAGCTTTCAACTTGGAGAACCTCTTTGATTGCCATGGAATTGGAGAGGCATTGAAGGGTGTGGAGAATTCTGAACACGTTCCCATTTATGAGGACAGGGACGGTGACTGGATGCTCGTCGGAGATGTCCCTTGGGAAATGTTCATTGATTCATGCAAGAGGCTGAGGATTATGAAGAGATCGGAGGCAAAAGGGTTCGATCTCCAACCAAAGGGATCTTTGAAGGGCAAAACGAAGTGA 567 0.4656 MTLGLEITELRLGLPGGGREPSKKNKKRVFSEIIVDAGGGEDENSCSGEAKSPASKNNDQVVGWPPVCSYRRRNSMSDNEASKMYVKVSMDGAPFLRKVDLAMQKGYSQLAFNLENLFDCHGIGEALKGVENSEHVPIYEDRDGDWMLVGDVPWEMFIDSCKRLRIMKRSEAKGFDLQPKGSLKGKTK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0212 188 Pfam AUX/IAA family 24 175 IPR033389 -
Sto1g0212 188 SUPERFAMILY CAD & PB1 domains 73 168 - -
Sto1g0212 188 ProSiteProfiles PB1 domain profile. 83 171 IPR000270 GO:0005515
Sto1g0212 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 1 175 - -
Sto1g0212 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 175 IPR003311 GO:0005634|GO:0006355
Sto1g0212 188 MobiDBLite consensus disorder prediction 38 58 - -
Sto1g0212 188 Gene3D - 77 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0212 Sto-Chr1 1573591 1575814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0212 81 173 B3 DNA Binding Superfamily AT4G23980 39.785 7.46e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto1g0212 AUX_IAA 1e-46 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0212 K14484 - gmx:547784 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0212 1 1573591 1575814 Sto9g0370 9 3549539 3550692 CCT
Sto1g0212 1 1573591 1575814 Sto1g0212 1 1573591 1575814 ECH