Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0210 ATGAGTGCGACTTCGTTAGCGGGCTTGCAAGACCACCTCAAATTGGCGAGGGATTACGCTCTCGAAGGCCTCTATGACACTTCCGTCATCTTCTTCGACGGCGCAATTGCTCAGATCAACAAGTATTTCCTCTTCTTCATCCTCTATTTTggGCATCTCAACACTGTGGATGACCCCTTAATGCGTACAAAATGGATGAATGTGAAGAAAGCCCTTTCTGAGGAAACAGAAGTTGTGAAGCAATTAGATGCAGAGAGAAGAGCATTTAAAGAAATCCCTAGTGGAAGTGGTAGACGCCCATCTTCACCTCCTATATCTGCTAAATCATCATCATTTGTTTTCCAACCGTTAGATGAGTATCCTACTTCATCAAGTGCCCCCATGGATGACCCTGATGTGTGGAGGCCACCTAGTAGAGATACTGCTAGTAGAAGACCCACAAGGTCTGGTCAAGTGGGCACTAGGAAGTCACCACAAGATGGGGCTTGGGCTAGAGGGTCTACTACAAGAACAGGTACCTCTGGCCGTGGTGCAAAGGGTGGTGCTACAAGTAGAGTTAACTCAGGAGTCCGGGCATCCACTACTGGAAAGAAAGGTGCCAGTTCCAGTTCTGGGAAGTCTAGCTCTAGCAAGGGAGATTCAGTTAATGGTGACGCTGACGATGGTAAGTCAAAGAAAGGACAATATGAGGGTCCTGATCCTGACTTGGCTGCAATGCTTGAAAGGGATGTATTAGAAAGCACTCCCGGGGTGAGATGGGATGATGTTGCAGGGCTAACTGAAGCTAAAAGACTTTTAGAAGAAGCCGTGGTGCTTCCGTTGTGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTCCTCATGTTTGGTCCTCCAGGAACTGGGAAAACACTGCTAGCTAAAGCAGTTGCTACTGAATGTGGGACCACTTTCTTCAATGTTTCTTCTGCTACTTTAGCTTCAAAATGGCGTGGAGAGAGTGAGCGTATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGCACAATTTTCATTGATGAGATTGACTCTCTGTGTAATGCTAGGGGGGCATCTGGGGAGCATGAATCGTCAAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAGCAATAGTTCCACAAATGAAGACGGTAGCCGTAAAATAGTCATGGTTCTGGCAGCCACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAGTTTTGAGAGCCGTAAGGAGCTGATCCGGATCAATTTGAAGACTGTAGAGGTGGCCCCTGATGTGAATATAGACGAAGTGGCTCGTCGGACAGAGGGCTATAGTGGAGATGATCTGACAAATGTCTGCCGTGATGCTTCCTTGAATGGTATGAGGCGCAAGATAGCAGGAAAGACTCGGGATGAGATAAAGAACATGCCGAAGGATGAGATCTCAAAGGACCCTATTGCCAAGTGTGATTTCGAAGAAGCTTTGACGAAGGTGCAACGAAGTGTTTCTCAGGCCGATATTGAACGCCACGAGAAATGGTTTTCGGAATTCGGATCAGCATAG 1617 0.4675 MSATSLAGLQDHLKLARDYALEGLYDTSVIFFDGAIAQINKYFLFFILYFGHLNTVDDPLMRTKWMNVKKALSEETEVVKQLDAERRAFKEIPSGSGRRPSSPPISAKSSSFVFQPLDEYPTSSSAPMDDPDVWRPPSRDTASRRPTRSGQVGTRKSPQDGAWARGSTTRTGTSGRGAKGGATSRVNSGVRASTTGKKGASSSSGKSSSSKGDSVNGDADDGKSKKGQYEGPDPDLAAMLERDVLESTPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPSFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISKDPIAKCDFEEALTKVQRSVSQADIERHEKWFSEFGSA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0210 538 MobiDBLite consensus disorder prediction 216 234 - -
Sto1g0210 538 MobiDBLite consensus disorder prediction 89 108 - -
Sto1g0210 538 MobiDBLite consensus disorder prediction 143 215 - -
Sto1g0210 538 MobiDBLite consensus disorder prediction 118 234 - -
Sto1g0210 538 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 538 - -
Sto1g0210 538 PANTHER AAA DOMAIN-CONTAINING 4 538 - -
Sto1g0210 538 Gene3D - 2 90 - -
Sto1g0210 538 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 538 IPR028596 GO:0008017|GO:0008568|GO:0051013
Sto1g0210 538 CDD AAA 284 427 - -
Sto1g0210 538 Pfam AAA+ lid domain 449 490 IPR041569 -
Sto1g0210 538 ProSitePatterns AAA-protein family signature. 399 418 IPR003960 GO:0005524|GO:0016887
Sto1g0210 538 Gene3D - 248 529 IPR027417 -
Sto1g0210 538 Pfam ATPase family associated with various cellular activities (AAA) 290 427 IPR003959 GO:0005524|GO:0016887
Sto1g0210 538 SMART AAA_5 286 429 IPR003593 -
Sto1g0210 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 535 IPR027417 -
Sto1g0210 538 Gene3D - 428 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0210 Sto-Chr1 1554112 1557679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0210 285 506 Calmodulin-binding Proteins AT3G56690 37.333 2.41e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0210 K07767 - tcc:18595849 888.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0379 9 3658773 3663024 Sto1g0210 1 1554112 1557679 CCT
Sto1g0210 1 1554112 1557679 Sto1g0210 1 1554112 1557679 ECH