Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0186 ATGACTACGAATTTCAGCATGAACCATGACTACGAAaacccatcatcatcatcatacaaGAAACCAAGAATTTCAGAATCGTTCCCTCATTCTGGGGCTCAGACTCATCCGATCGAAGGACGGAGCCGCAATTTCAAAACTCAGCTCTGCAGAAGATTCCGACTAGGAATCTGGAATCAATGCTCGTACGGAAGCACCTGCCGTTTCCTTCATATGAATCCAAGAGAGAGTTCAATGGTGGAAATTATTCCTAGAGCACCTGCAGGGCATAATTGCAATTGTGAATCTGATCAAATGGAGTTCAATGAGAGTTTGGATGCTGAAGTGAATCAAAATATGGTGATGATGAAAACAAAGCTGTGCATCAAGTGGGGGATCAAAGGGTATTGCTCATTTGGACAGGATTGTCGCTTTGCTCATGGACAAGCAGAATTAAGGAAACCTGATGGCTATTCTACTGCTGCTGCTACTACCAATGATTCAATCAGTGTGGTGCCAATTGGCCCTTTGCTTAAGAAGAAACCGTGTGTCTTAGATTTCAAATTCAAGAGAAATGAACTTCACAGGATAAGTCGTATCTATGCTGATTGGATTTAA 597 0.407 MTTNFSMNHDYENPSSSSYKKPRISESFPHSGAQTHPIEGRSRNFKTQLCRRFRLGIWNQCSYGSTCRFLHMNPRESSMVEIIPRAPAGHNCNCESDQMEFNESLDAEVNQNMVMMKTKLCIKWGIKGYCSFGQDCRFAHGQAELRKPDGYSTAAATTNDSISVVPIGPLLKKKPCVLDFKFKRNELHRISRIYADWI 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0186 198 ProSiteProfiles Zinc finger C3H1-type profile. 44 74 IPR000571 GO:0046872
Sto1g0186 198 ProSiteProfiles Zinc finger C3H1-type profile. 115 143 IPR000571 GO:0046872
Sto1g0186 198 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39-LIKE 35 198 - -
Sto1g0186 198 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 117 142 IPR000571 GO:0046872
Sto1g0186 198 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 45 71 IPR000571 GO:0046872
Sto1g0186 198 SUPERFAMILY CCCH zinc finger 43 72 IPR036855 GO:0046872
Sto1g0186 198 Gene3D - 39 77 - -
Sto1g0186 198 Gene3D - 110 148 - -
Sto1g0186 198 PANTHER CCCH ZINC FINGER/TIS11-RELATED 35 198 IPR045877 GO:0003729
Sto1g0186 198 SUPERFAMILY CCCH zinc finger 112 147 IPR036855 GO:0046872
Sto1g0186 198 MobiDBLite consensus disorder prediction 1 39 - -
Sto1g0186 198 SMART c3hfinal6 117 142 IPR000571 GO:0046872
Sto1g0186 198 SMART c3hfinal6 44 73 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0186 112 146 C3H Transcription Factor Family AT1G68200 54.286 4.57e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto1g0186 zf-CCCH 4.7e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0186 - - ming:122075668 94.7449