Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0171 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGTCATTGGGGCTCATGGGTTTCTGAGATTCGCCATCCATTATTGAAAAGGAGGGTGTGGCTTGGGACGTTTGAAACAGCAGAAGAAGCAGCGAGAGCTTATGATGAAGCTGCGATTTTGATGAGTGGAAGAAACGCGAAAACCAATTTTCCAGTGGCCACTAATAATGATGATAACAGTAAAACCCAAATTGGAAGTATTcacttttcttcatcttcttcatcatcgtcttcttcttcttcttcttcgacgAGTTTCTCCGAAGCTCTCAGCGCGAAGCTTCGGAAGTGCTGTAAATCGCCATCGCCATCGCTGACATGCTTGAGGCTGGACACAGAGAAGTCCCACATCGGAGTGTGGCAGAAGCGAGCGGGGCCTCGCTCTGACTCCAACTGGGTGATGATGGTGGAGTTGGAAAGGAAGAATCTTGGACTCGCAGGAGGCTCCGAAACGGCGTCGTTGTCGGATTTGccggcgccggagaaggtgaagCCGGAAGAGGAGAACATGAATAATGGTGGGTTGGATGAGGAACAGAGGATGGCATTGCAGATGATAGAAGAACTGCTCAATAGGAATTAG 618 0.432 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDEAAILMSGRNAKTNFPVATNNDDNSKTQIGSIHFSSSSSSSSSSSSSSTSFSEALSAKLRKCCKSPSPSLTCLRLDTEKSHIGVWQKRAGPRSDSNWVMMVELERKNLGLAGGSETASLSDLPAPEKVKPEEENMNNGGLDEEQRMALQMIEELLNRN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0171 205 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 205 - -
Sto1g0171 205 MobiDBLite consensus disorder prediction 159 189 - -
Sto1g0171 205 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 205 - -
Sto1g0171 205 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Sto1g0171 205 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Sto1g0171 205 MobiDBLite consensus disorder prediction 63 94 - -
Sto1g0171 205 MobiDBLite consensus disorder prediction 172 186 - -
Sto1g0171 205 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Sto1g0171 205 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Sto1g0171 205 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Sto1g0171 205 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Sto1g0171 205 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Sto1g0171 205 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0171 Sto-Chr1 1236093 1236910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0171 1 205 AP2-EREBP Transcription Factor Family AT1G15360 67.299 1.72e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto1g0171 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0171 - - gmx:100796962 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0171 1 1236093 1236910 Sto1g0171 1 1236093 1236910 ECH