Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0170 ATGGCAGAAACTCATCTACATGGGACTCTCCACGCCACCATCTTTGAGGTCGATAAGCTTGGTCCCGCTGATGATGGCCTTTTCAGCATGCTGAAGCACAAGATCGAGGATACAGTTGGTATAGGAGCAGGATCATCAAAAATCTACGCCACCGTTGATCTGGAGAAAGCCAGAGTGGGAAGAACAAGAGTGTTGGAAAACACAGATTCCAGCATAAGGTGGCACGAATCATTCCACATCTACTGCGCCCACGTGGCAACCAACGTGATATTCACCGTCAAAGGCGTCAATTCCATTGGCGCAACCTTAATCGGACGAGCCTACGTCCCCATCCAAGACGTACTCCACGGCGACTCCTACGACGAATGGGTCGAAATCTTAAGCGACGACAAAGAGCCCATCGGCTCAAAGATCCACGTCAAGCTCCAATACTTCGACGTCACAAAGGACCGAAACTGGAACCGAGGGATACGGAGTCCCAAATACCCAGGGGTACCCTACACTTTCTTCTCCCAAAGACAAGGCTGTAAGGTCAGACTATACCAAGACGCCCACGTCCCCGAAGACTTCATCCCGAGAATACCCCTCTCCGAGGGAAGAACCTACGACCCTCATAGGTGTTGGGAGGATGTTTTTGACGCAATCACTAACGCCAAGCATTTAATTTACATCACCGGTTGGTCTGTTTATACCGAGATTACCCTCGTGAGGGACGCCAAAAGGCCCAAGGATGGCGGTGACGTCACACTCGGCCAGCTTCTGAAGGACAAAGCAAGCCAAGGTGTTAAGGTTTTAATGCTTGTCTGGGACGACAGAACTTCcgttaatgttttaaaaaaagacgGGTTAATGGCAACGCATGACGAGGAGACGATGATATACTTCGAGGGAACCGAGGTTACTTGCGTTTTGTGCCCACGCGAGCCTGACGACGGAGGAAGTATAATCCAAGACATGCAAATTTCCACTATGTTCACTCACCACCAGAAGATCGTGGTGGTGGATAGCGAGCTTCCCGGAGGGGGTTCGGACAAGAGGAGAATAGTGAGTTTCGTCGGTGGGCTTGATTTGTGCGACGGCAGATACGACACTGCGTTTCACTCCCTCTTCAGAACGCTGGACACGGCGCATCATAACGACTTCCACCAGCCTAACTTCCCCGGTGCTGACATCACCAAAGGTGGGCCCAGGGAGCCATGGCACGATATTCACTCGCGTCTAGAGGGCCCCATAGCGTGGGACGTGCTGTATAATTTTGAACAGAGGTGGAAGCAGCAAGGCGGGAAGAACGTGCTCGTCTCGCCGGAGGGACTTGAGAATGTACTCATTCCGCCGTCGCCGGTGACGTTCCCGGAGGATCGCGAAACGTGGAATGTTCAGCTATTCAGATCCATCGACGGTGGCGCCGCCTTCGGATTCCCGGACAATCCAGAAGAAGCAGCCGATGCAGGGCTTGTGAGCGGGAAGGACAAGATCATAGATCGAGGAATTCAAGATGCGTACATTCATGCCATAAGGAGGGCGAGGAAGTTCATATACATAGAGAATCAGTATTTCCTCGGGAGCTCGTACGCGTGGAGCGGCGAAGAAGGAGATATACAACCAGAGGAAATCAACGCCCTGCACGTGATTCCGAAGGAGCTCTCGCTGAAGATCGTGAGTAAAATCGAAGCCGGCGAGAGATTCACGGTGTATGTGGTGGTGCCGATGTGGCCGGAGGGGATTCCGGATAGCGGATCCGTACAGGCGATATTGGATTGGCAGAGGAGGACGATGGAGACGATGTACAGAGATATCATCGAGGCGTTGAATGCTAAAGGAATCAGAGAAGATCCTCGCAAGTATTTGACATTCTTCTGTTTGGGAAATCGTGAAGTGAAAAGAGACGGAGAGTATGAGCCTAGTGAACAACCTGAACCTGATTCTGCTTATTTGAAAGCACAGGAGTCTCGTCGCTTCATGATCTATGTTCATACCAAGATGATgatagTGGATGATGAATACATAATCGTCGGATCAGCGAACATCAATCAAAGATCAATGGATGGGGCTCGGGACACAGAGATCGCAATGGGAGCTTATCAACCCCACCATTTAGCCACAAGCAGGGCTCCTGCAAGAGGTGAGATCCACGGGTTCCGAATGGCGTTATGGTACGAACACCTTGGGATGTTAAACGAATCGTTTAAGGAACCAGAGAGTGAAGAGTGTGTGGAGAAGGTGAACGAGATAGCGGATAAGTATTGGGAGATGTACTCGAGTGAGTCATTGGAGGATGATCTTGCGGGACACTTGTTGCGTTATCCCATCAAGATTTCAAGTGAAGGGAAAGTGGAAGAGCTTCCAGGATTTGAATTCTTTCCTGATACTCAGGCTCGGATTCTTGGTACTAAATCTGATTACTTGCCACCAATTCTTACTACttga 2427 0.4994 MAETHLHGTLHATIFEVDKLGPADDGLFSMLKHKIEDTVGIGAGSSKIYATVDLEKARVGRTRVLENTDSSIRWHESFHIYCAHVATNVIFTVKGVNSIGATLIGRAYVPIQDVLHGDSYDEWVEILSDDKEPIGSKIHVKLQYFDVTKDRNWNRGIRSPKYPGVPYTFFSQRQGCKVRLYQDAHVPEDFIPRIPLSEGRTYDPHRCWEDVFDAITNAKHLIYITGWSVYTEITLVRDAKRPKDGGDVTLGQLLKDKASQGVKVLMLVWDDRTSVNVLKKDGLMATHDEETMIYFEGTEVTCVLCPREPDDGGSIIQDMQISTMFTHHQKIVVVDSELPGGGSDKRRIVSFVGGLDLCDGRYDTAFHSLFRTLDTAHHNDFHQPNFPGADITKGGPREPWHDIHSRLEGPIAWDVLYNFEQRWKQQGGKNVLVSPEGLENVLIPPSPVTFPEDRETWNVQLFRSIDGGAAFGFPDNPEEAADAGLVSGKDKIIDRGIQDAYIHAIRRARKFIYIENQYFLGSSYAWSGEEGDIQPEEINALHVIPKELSLKIVSKIEAGERFTVYVVVPMWPEGIPDSGSVQAILDWQRRTMETMYRDIIEALNAKGIREDPRKYLTFFCLGNREVKRDGEYEPSEQPEPDSAYLKAQESRRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDTEIAMGAYQPHHLATSRAPARGEIHGFRMALWYEHLGMLNESFKEPESEECVEKVNEIADKYWEMYSSESLEDDLAGHLLRYPIKISSEGKVEELPGFEFFPDTQARILGTKSDYLPPILTT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0170 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 323 361 IPR001736 GO:0003824
Sto1g0170 808 Pfam C2 domain 9 126 IPR000008 -
Sto1g0170 808 Gene3D C2 domain 5 155 IPR035892 -
Sto1g0170 808 PANTHER PHOSPHOLIPASE D 3 808 IPR015679 -
Sto1g0170 808 PANTHER PHOSPHOLIPASE D 3 808 - -
Sto1g0170 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Sto1g0170 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 147 IPR035892 -
Sto1g0170 808 Gene3D Endonuclease Chain A 477 703 - -
Sto1g0170 808 CDD C2_plant_PLD 2 145 - -
Sto1g0170 808 Pfam Phospholipase D C terminal 727 798 IPR024632 -
Sto1g0170 808 SUPERFAMILY Phospholipase D/nuclease 148 433 - -
Sto1g0170 808 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Sto1g0170 808 Pfam Phospholipase D Active site motif 323 361 IPR001736 GO:0003824
Sto1g0170 808 Gene3D Endonuclease Chain A 197 439 - -
Sto1g0170 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Sto1g0170 808 SMART pld_4 323 361 IPR001736 GO:0003824
Sto1g0170 808 SMART pld_4 653 680 IPR001736 GO:0003824
Sto1g0170 808 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Sto1g0170 808 SUPERFAMILY Phospholipase D/nuclease 449 737 - -
Sto1g0170 808 SMART C2_3c 9 123 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0170 Sto-Chr1 1226203 1229276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0170 1 808 Phospholipase D Gene Family (Wang group) AT1G52570 74.908 0.0 1305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0170 K01115 - gmx:100786410 1357.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g0423 9 4158341 4163519 Sto1g0170 1 1226203 1229276 CCT
Sto9g0423 9 4158341 4163519 Sto1g0170 1 1226203 1229276 ECH
Sto1g0170 1 1226203 1229276 Sto1g0170 1 1226203 1229276 ECH