Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0122 ATGGTGGTTTCCGGCGAGCCTAGTGAGtcttcatcttcctccttcTCTTTATCCAACTTAACTCAGGCGTTTCCTTTCTCTTCTGGAAACCCTAGAATCGAGGAAACTAGGGGCGTAATGCATCTCTATCGCGAGGATCCTACTTCGTCGTCTGCTTCTGATCTCCCTGTTGGACGGAAGTCACTTGTCTGTGTGCTTGGAGTGCCAAATCACATGACATATGCAGATTTCTGCCAGTTCTGCGGTTCATTTATTCAGCATATCTTAGAGATGCGGATTGTCAGAAATGATGGGATGGAGGACCAGTACAGTGTTTTAATTCGGTTTGATGACCAAGACTCTACAGATGGTTTCTACAAGCATTATAATAGGCGCCGTTTCTCATCTCTGGAGGTGGAGGTTTGCCGTGTTCTTTTCACATTGGATGTGCAGTACACTGGCTCAATTGAACATGTACAAGCATCTAATGCTAGTTCAACTGATCAGCCTACATGTCCAGTCTGCCTTGAGCGACTAGATCAAGACACAGGTGGAATTCTTACAACTATCTGCAATCATTCATTTCATTGTTCTTGCATTTCAAAATGGGAAGATTCATCCTGTCCAGTATGCCGATATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATTTGTGGGTTTGTTGGCTGTGGAAAATATAAAGCAGGGCATGCCATAATGCATTGGAAAGAGACACAGCATTGCTATTCCCTAGAAGTGGAAACACAACGAGTATGGGATTATGTTGGAGATAACTACGTTCATAGACTAATCCAGTCCAAAACTGATGGGAAGCTGGTTGAGTTGAACTCTCACTGTATGCGTACAGGCAATGGGTGTGAAAGTTGCAGCTGTGAAGATAAGACCATGAGCGAGGCTATACTTAACAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGAATTGCTTGATACtcaacttgaaaaccaaaaatTATACTTTGAGTCCTTACTACAAGAAGTAAAAGAAGAAACTGAAAGAGAAATTTCCAAAGCTATTGAGAAGGCTGTCACTCTTAAACTGCACAAGTTGCAGTCGAAGCTTGACAGATGTTATAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTGCTTAAAAATCAGGAGATTTGGAAAGCTAAGATACTTGAGATTGAAGAGAGggAGAAAAAATCTATAAAACTGAAGGATGATAAGATAATGACCCTCGAAGAGCAGCTGAGAAATCTCATGGTTTGTCTCGAAAATGGCGAAACAGTGGAACAACTGTCCGAGTCAAACGAAATCAAAGATGGAACTGTTATTCCCTTATCAACAGAATCCTCATCAACTAGTGCCTCTGAGCAAGGCACTAAACCTACCAACAAAAGGAACTAA 1437 0.4008 MVVSGEPSESSSSSFSLSNLTQAFPFSSGNPRIEETRGVMHLYREDPTSSSASDLPVGRKSLVCVLGVPNHMTYADFCQFCGSFIQHILEMRIVRNDGMEDQYSVLIRFDDQDSTDGFYKHYNRRRFSSLEVEVCRVLFTLDVQYTGSIEHVQASNASSTDQPTCPVCLERLDQDTGGILTTICNHSFHCSCISKWEDSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGKYKAGHAIMHWKETQHCYSLEVETQRVWDYVGDNYVHRLIQSKTDGKLVELNSHCMRTGNGCESCSCEDKTMSEAILNSKVEAIVNEYNELLDTQLENQKLYFESLLQEVKEETEREISKAIEKAVTLKLHKLQSKLDRCYKEKKFLDDLNENLLKNQEIWKAKILEIEEREKKSIKLKDDKIMTLEEQLRNLMVCLENGETVEQLSESNEIKDGTVIPLSTESSSTSASEQGTKPTNKRN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0122 478 SMART ring_2 165 204 IPR001841 -
Sto1g0122 478 ProSiteProfiles Zinc finger RING-type profile. 165 205 IPR001841 -
Sto1g0122 478 CDD RRM_BRAP2_like 63 144 - -
Sto1g0122 478 PANTHER BRCA1-ASSOCIATED PROTEIN 7 468 - -
Sto1g0122 478 Coils Coil 341 368 - -
Sto1g0122 478 SUPERFAMILY RING/U-box 181 280 - -
Sto1g0122 478 MobiDBLite consensus disorder prediction 445 478 - -
Sto1g0122 478 SMART Zf_UBP_1 215 264 IPR001607 GO:0008270
Sto1g0122 478 Pfam BRCA1-associated protein 2 56 151 IPR011422 -
Sto1g0122 478 ProSiteProfiles Zinc finger UBP-type profile. 199 292 IPR001607 GO:0008270
Sto1g0122 478 CDD RING-H2_BRAP2 163 206 - -
Sto1g0122 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 206 IPR013083 -
Sto1g0122 478 Pfam Zn-finger in ubiquitin-hydrolases and other protein 216 275 IPR001607 GO:0008270
Sto1g0122 478 Coils Coil 388 408 - -
Sto1g0122 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 286 IPR013083 -
Sto1g0122 478 MobiDBLite consensus disorder prediction 445 472 - -
Sto1g0122 478 Pfam Ring finger domain 164 205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0122 Sto-Chr1 825322 829411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0122 165 205 C3H Transcription Factor Family AT1G72220 48.837 2.34e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0122 K10632 - qsu:112004506 771.926