Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0111 ATGGCCAGACTCCAACAACGTTATCGTGGTGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGTCACCCTCTCTTGAAGACTAGAATATGGCTAGGCACATTCGAAACGGCCGAAGATGCAGCGAAAGCATACGACGAAGCAGCCAGGCTTTTGTGCGTCTCAAAAGCCCGAACTAACTTTACATTAAAGCCCAATAGGCCCaactcttcttcctcttcttcttctaatcTTCTCTCTCCAACTATAATGACCAAGCTTCACAAGTGTCACATGGCTTCTCTTTCACTTCAATTGAACAAACAACCACACAagcaacatcatcatcatcaatcacAAAGGACCCAAAGTGTTCCGTTTTCCTCCGACAATGGCGCCGACGCCGAAGCAAGCTCCGGGATGGGTTCCCGGTGGCCGGGGAATAGACACGAAGATGAAGATCAGGAAGAAGAGGACGAGGAGGAGAAATTTCTTCATCAACAAGTGCTTGAAGAGGATCACATAGAGCAAATGATTCAAGAGTTGCTTCATTATGGCTCAATTGAACTTTGCTCTCTTGCCtctcctaattaa 579 0.4301 MARLQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLLCVSKARTNFTLKPNRPNSSSSSSSNLLSPTIMTKLHKCHMASLSLQLNKQPHKQHHHHQSQRTQSVPFSSDNGADAEASSGMGSRWPGNRHEDEDQEEEDEEEKFLHQQVLEEDHIEQMIQELLHYGSIELCSLASPN 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0111 192 Pfam AP2 domain 7 52 IPR001471 GO:0003700|GO:0006355
Sto1g0111 192 PANTHER ETHYLENE RESPONSE FACTOR 1 187 - -
Sto1g0111 192 MobiDBLite consensus disorder prediction 102 165 - -
Sto1g0111 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 187 - -
Sto1g0111 192 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Sto1g0111 192 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Sto1g0111 192 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Sto1g0111 192 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Sto1g0111 192 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Sto1g0111 192 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Sto1g0111 192 MobiDBLite consensus disorder prediction 115 131 - -
Sto1g0111 192 CDD AP2 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0111 Sto-Chr1 759254 759998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0111 1 188 AP2-EREBP Transcription Factor Family AT5G25190 58.639 3.28e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto1g0111 AP2 5.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0111 - - gmx:100527365 200.29