Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0102 ATGCCAGCTCTTTTAGCAAGTGGGGTTCAACCTGTCTTTTTCTTGGGCTCTTTCCACTCAGTTTCCTTGTTCAACttgagcttcttcttcttcttcttcttccacttttGGAGTGCTAACTACTCTCCTACTCTATATATGCCTCTTTCACTTGCTTTACTCAAGAGATTAGGAAGCAGGCAAATTAAAGTAGATAATTTAGATTTTATTGCTATGGATTGTTCTTCATGGGTCAATACTTCCTTGGATCTCAACATCAgacctcatcatcatcatcatcatcatcacataCCTCATGAAGAAGTTCCTAAAAAGGAGGTGGAAAGCAACTTTTTCTTATCTGGGATGAAATCTTCCGTAAAAGAAGAGCCATTTCATACTAGTGGCGGTTCGTTGGAGGAGGAGCTGAAGAGGGTGAGTGCAGAGAACAAGAGGTTGACTGAAATGCTGACAGAGATGTGTGAGAATTACAATTCTCTGAGAAGACACTTGGCTGAATACATGAGAAACAATCCTCAAAAGGAGCTCAGTAGTAGCATGAGCATCCCATCGTCTAAGAAAAGGAAGCCTGAAAACAGCTTCAACAACAATAGTTGTAATCTGATGGGAATTCATGCAAACTCTGAGAGCTGCTCAACTGATGAAGAATCATGCAAGAAACCTAAGGAAGACACCATCAAAGCTAAAATTTCCAGAGCTTATGTCAGGACTGAACCATCTGATACTAGCCTTATTGTGAAGGATGGATATCAATGGAGGAAATATGGGCAAAAGGTGACCAGAGATAACCCTTCTCCAAGAGCATACTTCAAATGCTCTTTTGCTCCAAGCTGCCCCGTGAAAAAGaagGTGCAAAGAAGTGTGGAAGATCAATCTATTCTGGTTGCAACATATCAAGGGGAGCACAACCATCCTCAACCTTCTCAGATGGAGACAACAACATCGAATTCAAGCCGTTTTGTAAGCCTAGGTGGTTCAGTACCATGTTCATCACCATCTTTGAGCTCCTCTACTGCACCATCAACACTTACCTTTGACTTGACAAAACCTAAGTCCAACAGCACCaataccaccaccaccaccaccaagaaccctaaaccaaaacttgATTCGCCGGGAGTCCCGCAGGTTTTAGTGGAACAGATGGCTTCTTCTTTGACCAAAGATCCCAATTTCAGAGCTGCACTAGTTGCTGCCATTTCTGGAAGAATATCCCACAAGAATTGA 1227 0.3863 MPALLASGVQPVFFLGSFHSVSLFNLSFFFFFFFHFWSANYSPTLYMPLSLALLKRLGSRQIKVDNLDFIAMDCSSWVNTSLDLNIRPHHHHHHHHIPHEEVPKKEVESNFFLSGMKSSVKEEPFHTSGGSLEEELKRVSAENKRLTEMLTEMCENYNSLRRHLAEYMRNNPQKELSSSMSIPSSKKRKPENSFNNNSCNLMGIHANSESCSTDEESCKKPKEDTIKAKISRAYVRTEPSDTSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSILVATYQGEHNHPQPSQMETTTSNSSRFVSLGGSVPCSSPSLSSSTAPSTLTFDLTKPKSNSTNTTTTTTKNPKPKLDSPGVPQVLVEQMASSLTKDPNFRAALVAAISGRISHKN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0102 408 Gene3D WRKY domain 230 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto1g0102 408 Pfam WRKY DNA -binding domain 247 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto1g0102 408 ProSiteProfiles WRKY domain profile. 241 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto1g0102 408 SUPERFAMILY WRKY DNA-binding domain 243 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto1g0102 408 Coils Coil 129 156 - -
Sto1g0102 408 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 72 408 IPR044810 GO:0003700
Sto1g0102 408 MobiDBLite consensus disorder prediction 299 367 - -
Sto1g0102 408 MobiDBLite consensus disorder prediction 299 372 - -
Sto1g0102 408 SMART WRKY_cls 246 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto1g0102 408 MobiDBLite consensus disorder prediction 172 196 - -
Sto1g0102 408 PANTHER TRANSCRIPTION FACTOR 72 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0102 Sto-Chr1 682152 684005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0102 120 408 WRKY Transcription Factor Family AT1G80840 53.082 6.14e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sto1g0102 WRKY 4.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0102 - - gsj:114388658 392.119