Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0093 ATGGAGTATGCGCCAGCAAATGTTCGTGTGCTTGTTCCTCGTAGTACTGATTCTTCAGGATCTGAATCTTGTCTTGGAAATAATGGAAGGATTTTCTCATGCAATTACTGCCAGAGAAAATTCTACAGCTCGCAGGCACTTGGGGGACACCAAAATGCACATAAACGTGAGAGGACATTGGCAAAAAGAGGACACAGTCACAGGATTATTCATGCTTCATCAGTTTCTTCTGAAGATTTTTATTATCCTAGTATGGCTTCTCTTCCTTTGAATAATGGATCATCATCATCCTTTAGAACTCACACACCACTTGGGATTCATGTACACTCCATGATTCACAAGCCCTCTTTTCAACCTCCTCGTTTCCAGAAGCTTCCATTTGGGAATTCCCAACATGTTGGAACagaatcatcatcattattatcattGTCATGTTTGGCTTCTGGGATTCCCAGGTTCTCTCCTAGGCCTGTCTCAGAGGAGCTGCACAAGCTTGACTTGTCCCTCAAATTATGA 516 0.4128 MEYAPANVRVLVPRSTDSSGSESCLGNNGRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHSHRIIHASSVSSEDFYYPSMASLPLNNGSSSSFRTHTPLGIHVHSMIHKPSFQPPRFQKLPFGNSQHVGTESSSLLSLSCLASGIPRFSPRPVSEELHKLDLSLKL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0093 171 PANTHER ZINC FINGER PROTEIN 1-LIKE 20 132 - -
Sto1g0093 171 SUPERFAMILY beta-beta-alpha zinc fingers 29 60 IPR036236 -
Sto1g0093 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Sto1g0093 171 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Sto1g0093 171 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 20 132 IPR044246 GO:0009788
Sto1g0093 171 Gene3D Classic Zinc Finger 17 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0093 Sto-Chr1 590199 591679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0093 30 117 C2H2 Transcription Factor Family AT1G80730 58.947 1.67e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto1g0093 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0093 - - gmx:100812573 130.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto1g0093 1 590199 591679 Sto1g0093 1 590199 591679 ECH