Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto1g0078 ATGATGGAAAGTTGCAAAAAATCCTCCATTTTAGGTCAGTCATACAATTCTCTATATGTCAATCCTCTCACTGAGCTCAGGCACACTCGTAGCTGCAGCGACTATGGCCGCTTAGCTTCCAGAGGAGACAACTTTGAAGATTTCACGCACAGAACAATGTCAGCAGATAACAAAGAGAATTTCACGCCCAACAAGAAAGAGATTGCTGAAAACTGCGATAAGGAAAATGCTGTGCCCATAAATGGGTCTTCTTGTTCTTTGCCTAGACACTTTCCAAAATCTAAGTCTTTGTCTACAGACAGGATTTTGAAGCCAAATTCGCTTCAGTTCTGTATGCAGATGGATGAGCCTgaaaagggttttgggtctaagaTTTGGGATtctaagtgttctgaaaattctAGCTCTTTGAATGTTTGGGATTTCTCTGACTCTGAGGCAGCTCCAGCTTCGTCCTGGTCAACATTGCCCAATAAATCTTTGATATGTAGACCGTTGCCTGTAGATATTGGAAGGTGTACATGTGTTATTGTGAAGGAAACAAAGCCTGAAGGATTATCTGGGGGCACTGTGTTTTCCCTTTATACCTATGAAGGTCAGGGACGTCAGAATAGGAAACTAGCTGTGGCTTATCACAAAAGGCAGAATGGGAGGTCTCAGTTCATTGTAGCTCAGAATATAAAAGGTCTATTATCCAAATCAGATGATACTTTTCTTGGGACAGTAACAGCTAACCTCATGGGTTCAAAATACCAAATTTGGGATCAGGGGTGTTGTCATAATTCCCATGATAAACAGCTACAACCACCTCTTGGTGTTGTGAAGTTTATACCTACAGTAGCTACATGTACTGGAAGTTGCAGAGGCATGAGGGCATATATACCCAAGCATCAATCCATGTCACTGAAGAACACAACCCAGGTAAAACATATCAAGGGACTGCCAATGGATTGGGAAGGAAAATTGGATAAAGTCCATCAACTATTCTCGAGGGTTCCACTTTACAACAAGATTTCAAAGCAATTTGAACTTGACTTCAGAGACAAGGGAAGAGCAGAACTCAGAATCCAAAGATCAGTAAAAAATTTCCAGCTCACTTTGGGGGAGAATGGGAGGCAGACAATACTTCAGCTTGGTCGAGTCGGAAAATCACAATTCGTTATGGACTACAGATATCCTTTGACAGGTTACCAGGCATTTTGCTTATGTTTAGCTTCCATCGATACGAAGCTTTGTTGCACTGTCTAG 1248 0.4046 MMESCKKSSILGQSYNSLYVNPLTELRHTRSCSDYGRLASRGDNFEDFTHRTMSADNKENFTPNKKEIAENCDKENAVPINGSSCSLPRHFPKSKSLSTDRILKPNSLQFCMQMDEPEKGFGSKIWDSKCSENSSSLNVWDFSDSEAAPASSWSTLPNKSLICRPLPVDIGRCTCVIVKETKPEGLSGGTVFSLYTYEGQGRQNRKLAVAYHKRQNGRSQFIVAQNIKGLLSKSDDTFLGTVTANLMGSKYQIWDQGCCHNSHDKQLQPPLGVVKFIPTVATCTGSCRGMRAYIPKHQSMSLKNTTQVKHIKGLPMDWEGKLDKVHQLFSRVPLYNKISKQFELDFRDKGRAELRIQRSVKNFQLTLGENGRQTILQLGRVGKSQFVMDYRYPLTGYQAFCLCLASIDTKLCCTV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto1g0078 415 Pfam Tub family 164 409 IPR000007 -
Sto1g0078 415 PANTHER TUBBY-RELATED 2 413 - -
Sto1g0078 415 PRINTS Tubby superfamily signature 238 262 IPR000007 -
Sto1g0078 415 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Sto1g0078 415 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Sto1g0078 415 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Sto1g0078 415 Gene3D Tubby Protein; Chain A 155 414 IPR025659 -
Sto1g0078 415 SUPERFAMILY Tubby C-terminal domain-like 150 414 IPR025659 -
Sto1g0078 415 PANTHER TUBBY-LIKE PROTEIN 8 2 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto1g0078 Sto-Chr1 497575 500183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto1g0078 52 308 TUB Transcription Factor Family AT1G16070 52.830 6.58e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sto1g0078 Tub 3.7e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto1g0078 K19600 - jre:109010979 558.14